GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1014538 Query DataSets for GSM1014538
Status Public on Oct 03, 2012
Title UW_DnaseDgf_M059J
Sample type SRA
Source name M059J
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseDgf
datatype description: DNase Digital Footprinting
cell: M059J
cell organism: human
cell description: malignant glioblastoma, glioma, lack DNA-dependent protein kinase activity, deficient in repair of DNA double strand breaks, the cells are negative for glial fibrillary acidic protein (GFAP), tumor specimen taken from a 33 year old
cell karyotype: cancer
cell lineage: ectoderm
cell sex: M
labexpid: DS20493
labversion: Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75
Biomaterial provider ATCC
Growth protocol M059J_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol For more information, see
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina HiSeq 2000
Data processing
Submission date Oct 03, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL11154
Series (1)
GSE26328 DNaseI Digital Genomic Footprinting from ENCODE/University of Washington [Human]
SRA SRX193610
BioSample SAMN01761118
Named Annotation GSM1014538_hg19_wgEncodeUwDgfM059jRaw.bigWig
Named Annotation GSM1014538_hg19_wgEncodeUwDgfM059jSig.bigWig

Supplementary file Size Download File type/resource
GSM1014538_hg19_wgEncodeUwDgfM059jHotspots.broadPeak.gz 4.2 Mb (ftp)(http) BROADPEAK
GSM1014538_hg19_wgEncodeUwDgfM059jPk.narrowPeak.gz 3.3 Mb (ftp)(http) NARROWPEAK
GSM1014538_hg19_wgEncodeUwDgfM059jRaw.bigWig 344.3 Mb (ftp)(http) BIGWIG
GSM1014538_hg19_wgEncodeUwDgfM059jSig.bigWig 598.4 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap