GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1014537 Query DataSets for GSM1014537
Status Public on Oct 03, 2012
Title UW_DnaseDgf_CD4+_Naive_Wb11970640
Sample type SRA
Source name CD4+_Naive_Wb11970640
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseDgf
datatype description: DNase Digital Footprinting
cell: CD4+_Naive_Wb11970640
cell organism: human
cell description: CD4+ naive sorted cells, donor is Caucasian, male 26 year old, primary pheresis of single normal subject
cell karyotype: normal
cell lineage: mesoderm
cell sex: M
treatment: None
treatment description: No special treatment or protocol applies
labexpid: DS14108
labversion: Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75
Biomaterial provider John Stamatoyannopoulos
Treatment protocol None
Extracted molecule genomic DNA
Extraction protocol For more information, see
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina HiSeq 2000
Data processing
Submission date Oct 03, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL11154
Series (2)
GSE26328 DNaseI Digital Genomic Footprinting from ENCODE/University of Washington [Human]
GSE51341 Conservation of mouse-human trans-regulatory circuitry despite high cis-regulatory divergence
SRA SRX193609
BioSample SAMN01761117
Named Annotation GSM1014537_hg19_wgEncodeUwDgfCd4naivewb11970640Raw.bigWig
Named Annotation GSM1014537_hg19_wgEncodeUwDgfCd4naivewb11970640Sig.bigWig

Supplementary file Size Download File type/resource
GSM1014537_hg19_wgEncodeUwDgfCd4naivewb11970640Hotspots.broadPeak.gz 2.6 Mb (ftp)(http) BROADPEAK
GSM1014537_hg19_wgEncodeUwDgfCd4naivewb11970640Pk.narrowPeak.gz 1.6 Mb (ftp)(http) NARROWPEAK
GSM1014537_hg19_wgEncodeUwDgfCd4naivewb11970640Raw.bigWig 378.7 Mb (ftp)(http) BIGWIG
GSM1014537_hg19_wgEncodeUwDgfCd4naivewb11970640Sig.bigWig 687.0 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap