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Sample GSM1014535 Query DataSets for GSM1014535
Status Public on Oct 03, 2012
Title UW_DnaseDgf_RPMI-7951
Sample type SRA
Source name RPMI-7951
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseDgf
datatype description: DNase Digital Footprinting
cell: RPMI-7951
cell organism: human
cell description: Human Skin Malignant Melanoma Cells, This is a hyperdiploid human cell line with the modal chromosome number of 49, occurring in 24% of cells. Polyploid cells occurred at 22%, which is high.
cell karyotype: cancer
cell lineage: ectoderm
cell sex: F
labexpid: DS20909
labversion: Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75
Biomaterial provider ATCC
Growth protocol RPMI7951_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol For more information, see
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina HiSeq 2000
Data processing
Submission date Oct 03, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL11154
Series (1)
GSE26328 DNaseI Digital Genomic Footprinting from ENCODE/University of Washington [Human]
SRA SRX193607
BioSample SAMN01761115
Named Annotation GSM1014535_hg19_wgEncodeUwDgfRpmi7951Raw.bigWig
Named Annotation GSM1014535_hg19_wgEncodeUwDgfRpmi7951Sig.bigWig

Supplementary file Size Download File type/resource
GSM1014535_hg19_wgEncodeUwDgfRpmi7951Hotspots.broadPeak.gz 3.3 Mb (ftp)(http) BROADPEAK
GSM1014535_hg19_wgEncodeUwDgfRpmi7951Pk.narrowPeak.gz 2.6 Mb (ftp)(http) NARROWPEAK
GSM1014535_hg19_wgEncodeUwDgfRpmi7951Raw.bigWig 337.0 Mb (ftp)(http) BIGWIG
GSM1014535_hg19_wgEncodeUwDgfRpmi7951Sig.bigWig 532.9 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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