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Sample GSM1014534 Query DataSets for GSM1014534
Status Public on Oct 03, 2012
Title UW_DnaseDgf_HGF
Sample type SRA
Source name HGF
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseDgf
datatype description: DNase Digital Footprinting
cell: HGF
cell organism: human
cell description: gingival fibroblasts
cell karyotype: normal
cell sex: U
labexpid: DS11752
labversion: Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75
Biomaterial provider ScienCell
Growth protocol HGF_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol For more information, see
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina HiSeq 2000
Data processing
Submission date Oct 03, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL11154
Series (1)
GSE26328 DNaseI Digital Genomic Footprinting from ENCODE/University of Washington [Human]
SRA SRX193606
BioSample SAMN01761097
Named Annotation GSM1014534_hg19_wgEncodeUwDgfHgfRaw.bigWig
Named Annotation GSM1014534_hg19_wgEncodeUwDgfHgfSig.bigWig

Supplementary file Size Download File type/resource
GSM1014534_hg19_wgEncodeUwDgfHgfHotspots.broadPeak.gz 4.4 Mb (ftp)(http) BROADPEAK
GSM1014534_hg19_wgEncodeUwDgfHgfPk.narrowPeak.gz 2.8 Mb (ftp)(http) NARROWPEAK
GSM1014534_hg19_wgEncodeUwDgfHgfRaw.bigWig 383.4 Mb (ftp)(http) BIGWIG
GSM1014534_hg19_wgEncodeUwDgfHgfSig.bigWig 727.0 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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