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Sample GSM1014517 Query DataSets for GSM1014517
Status Public on Oct 03, 2012
Title UW_DnaseDgf_A549
Sample type SRA
Source name A549
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseDgf
datatype description: DNase Digital Footprinting
cell: A549
cell organism: human
cell description: epithelial cell line derived from a lung carcinoma tissue. (PMID: 175022), "This line was initiated in 1972 by D.J. Giard, et al. through explant culture of lung carcinomatous tissue from a 58-year-old caucasian male." - ATCC, newly promoted to tier 2: not in 2011 analysis
cell karyotype: cancer
cell lineage: endoderm
cell sex: M
labexpid: DS14289
labversion: Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75
Biomaterial provider ATCC
Growth protocol A549_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol For more information, see
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina HiSeq 2000
Data processing
Submission date Oct 03, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL11154
Series (1)
GSE26328 DNaseI Digital Genomic Footprinting from ENCODE/University of Washington [Human]
SRA SRX193589
BioSample SAMN01761098
Named Annotation GSM1014517_hg19_wgEncodeUwDgfA549Raw.bigWig
Named Annotation GSM1014517_hg19_wgEncodeUwDgfA549Sig.bigWig

Supplementary file Size Download File type/resource
GSM1014517_hg19_wgEncodeUwDgfA549Hotspots.broadPeak.gz 4.0 Mb (ftp)(http) BROADPEAK
GSM1014517_hg19_wgEncodeUwDgfA549Pk.narrowPeak.gz 2.6 Mb (ftp)(http) NARROWPEAK
GSM1014517_hg19_wgEncodeUwDgfA549Raw.bigWig 330.3 Mb (ftp)(http) BIGWIG
GSM1014517_hg19_wgEncodeUwDgfA549Sig.bigWig 481.8 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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