GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1014516 Query DataSets for GSM1014516
Status Public on Oct 03, 2012
Title UW_DnaseDgf_HA-h
Sample type SRA
Source name HA-h
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseDgf
datatype description: DNase Digital Footprinting
cell: HA-h
cell organism: human
cell description: astrocytes-hippocampal
cell karyotype: normal
cell lineage: ectoderm
cell sex: U
labexpid: DS15192
labversion: Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75
Biomaterial provider ScienCell
Growth protocol HAh_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol For more information, see
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina HiSeq 2000
Data processing
Submission date Oct 03, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL11154
Series (1)
GSE26328 DNaseI Digital Genomic Footprinting from ENCODE/University of Washington [Human]
SRA SRX193588
BioSample SAMN01761096
Named Annotation GSM1014516_hg19_wgEncodeUwDgfHahRaw.bigWig
Named Annotation GSM1014516_hg19_wgEncodeUwDgfHahSig.bigWig

Supplementary file Size Download File type/resource
GSM1014516_hg19_wgEncodeUwDgfHahHotspots.broadPeak.gz 4.4 Mb (ftp)(http) BROADPEAK
GSM1014516_hg19_wgEncodeUwDgfHahPk.narrowPeak.gz 3.4 Mb (ftp)(http) NARROWPEAK
GSM1014516_hg19_wgEncodeUwDgfHahRaw.bigWig 359.2 Mb (ftp)(http) BIGWIG
GSM1014516_hg19_wgEncodeUwDgfHahSig.bigWig 667.3 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap