NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1014515 Query DataSets for GSM1014515
Status Public on Oct 03, 2012
Title UW_DnaseDgf_HCM
Sample type SRA
 
Source name HCM
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseDgf
datatype description: DNase Digital Footprinting
cell: HCM
cell organism: human
cell description: cardiac myocytes
cell karyotype: normal
cell lineage: mesoderm
cell sex: U
labexpid: DS12599
labversion: Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75
Biomaterial provider ScienCell
Growth protocol HCM_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDgf
 
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina HiSeq 2000
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDgf
 
Submission date Oct 03, 2012
Last update date Aug 26, 2014
Contact name ENCODE DCC
E-mail encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL11154
Series (1)
GSE26328 DNaseI Digital Genomic Footprinting from ENCODE/University of Washington [Human]
Relations
SRA SRX193587
BioSample SAMN01761095
Named Annotation GSM1014515_hg19_wgEncodeUwDgfHcmRaw.bigWig
Named Annotation GSM1014515_hg19_wgEncodeUwDgfHcmSig.bigWig

Supplementary file Size Download File type/resource
GSM1014515_hg19_wgEncodeUwDgfHcmHotspots.broadPeak.gz 3.5 Mb (ftp)(http) BROADPEAK
GSM1014515_hg19_wgEncodeUwDgfHcmPk.narrowPeak.gz 2.9 Mb (ftp)(http) NARROWPEAK
GSM1014515_hg19_wgEncodeUwDgfHcmRaw.bigWig 290.4 Mb (ftp)(http) BIGWIG
GSM1014515_hg19_wgEncodeUwDgfHcmSig.bigWig 396.4 Mb (ftp)(http) BIGWIG
Raw data provided as supplementary file
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap