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Sample GSM1014513 Query DataSets for GSM1014513
Status Public on Oct 03, 2012
Title UW_DnaseDgf_NB4
Sample type SRA
Source name NB4
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseDgf
datatype description: DNase Digital Footprinting
cell: NB4
cell organism: human
cell description: acute promyelocytic leukemia cell line. (PMID: 1995093)
cell karyotype: cancer
cell lineage: mesoderm
cell sex: U
labexpid: DS12543
labversion: Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75
Biomaterial provider Refer to protocol documents for differing sources, UW: DSMZ (Deutsche Sammlung von Mikroorganismen und Zellkulturen) ACC-207 or Yale (Stanford): National Cell Culture Center
Growth protocol NB4_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol For more information, see
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina HiSeq 2000
Data processing
Submission date Oct 03, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL11154
Series (1)
GSE26328 DNaseI Digital Genomic Footprinting from ENCODE/University of Washington [Human]
SRA SRX193585
BioSample SAMN01761093
Named Annotation GSM1014513_hg19_wgEncodeUwDgfNb4Raw.bigWig
Named Annotation GSM1014513_hg19_wgEncodeUwDgfNb4Sig.bigWig

Supplementary file Size Download File type/resource
GSM1014513_hg19_wgEncodeUwDgfNb4Hotspots.broadPeak.gz 3.3 Mb (ftp)(http) BROADPEAK
GSM1014513_hg19_wgEncodeUwDgfNb4Pk.narrowPeak.gz 2.5 Mb (ftp)(http) NARROWPEAK
GSM1014513_hg19_wgEncodeUwDgfNb4Raw.bigWig 352.5 Mb (ftp)(http) BIGWIG
GSM1014513_hg19_wgEncodeUwDgfNb4Sig.bigWig 589.0 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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