|
| Status |
Public on Oct 03, 2012 |
| Title |
UW_DnaseDgf_NB4 |
| Sample type |
SRA |
| |
|
| Source name |
NB4
|
| Organism |
Homo sapiens |
| Characteristics |
lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseDgf
datatype description: DNase Digital Footprinting
cell: NB4
cell organism: human
cell description: acute promyelocytic leukemia cell line. (PMID: 1995093)
cell karyotype: cancer
cell lineage: mesoderm
cell sex: U
labexpid: DS12543
labversion: Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75
|
| Biomaterial provider |
Refer to protocol documents for differing sources, UW: DSMZ (Deutsche Sammlung von Mikroorganismen und Zellkulturen) ACC-207 http://www.dsmz.de/ or Yale (Stanford): National Cell Culture Center http://www.nccc.com/
|
| Growth protocol |
NB4_Stam_protocol.pdf
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDgf
|
| |
|
| Library strategy |
DNase-Hypersensitivity |
| Library source |
genomic |
| Library selection |
DNAse |
| Instrument model |
Illumina HiSeq 2000 |
| |
|
| Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwDgf
|
| |
|
| Submission date |
Oct 03, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
encode-help@lists.stanford.edu
|
| Organization name |
ENCODE DCC
|
| Street address |
300 Pasteur Dr
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
| |
|
| Platform ID |
GPL11154 |
| Series (1) |
| GSE26328 |
DNaseI Digital Genomic Footprinting from ENCODE/University of Washington [Human] |
|
| Relations |
| SRA |
SRX193585 |
| BioSample |
SAMN01761093 |
| Named Annotation |
GSM1014513_hg19_wgEncodeUwDgfNb4Raw.bigWig |
| Named Annotation |
GSM1014513_hg19_wgEncodeUwDgfNb4Sig.bigWig |
