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Sample GSM1014512 Query DataSets for GSM1014512
Status Public on Oct 03, 2012
Title UW_DnaseDgf_NHDF-neo
Sample type SRA
Source name NHDF-neo
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseDgf
datatype description: DNase Digital Footprinting
cell: NHDF-neo
cell organism: human
cell description: neonatal dermal fibroblasts
cell karyotype: normal
cell lineage: mesoderm
cell sex: U
labexpid: DS11923
labversion: Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75
Biomaterial provider Lonza
Growth protocol NHDF-neo_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol For more information, see
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina HiSeq 2000
Data processing
Submission date Oct 03, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL11154
Series (2)
GSE26328 DNaseI Digital Genomic Footprinting from ENCODE/University of Washington [Human]
GSE51341 Conservation of mouse-human trans-regulatory circuitry despite high cis-regulatory divergence
SRA SRX193584
BioSample SAMN01761092
Named Annotation GSM1014512_hg19_wgEncodeUwDgfNhdfneoRaw.bigWig
Named Annotation GSM1014512_hg19_wgEncodeUwDgfNhdfneoSig.bigWig

Supplementary file Size Download File type/resource
GSM1014512_hg19_wgEncodeUwDgfNhdfneoHotspots.broadPeak.gz 3.8 Mb (ftp)(http) BROADPEAK
GSM1014512_hg19_wgEncodeUwDgfNhdfneoPk.narrowPeak.gz 2.9 Mb (ftp)(http) NARROWPEAK
GSM1014512_hg19_wgEncodeUwDgfNhdfneoRaw.bigWig 342.6 Mb (ftp)(http) BIGWIG
GSM1014512_hg19_wgEncodeUwDgfNhdfneoSig.bigWig 539.0 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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