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Sample GSM1014191 Query DataSets for GSM1014191
Status Public on Oct 03, 2012
Title UW_DnaseSeq_MEL_immortalized_Unknown
Sample type SRA
Source name MEL
Organism Mus musculus
Characteristics lab: UW-m
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseSeq
datatype description: DNaseI HS Sequencing
line: MEL
cell organism: mouse
cell description: Leukemia (K562 analog)
cell sex: M
age: immortalized
biomaterial_type: immortalized cell line
strain: Unknown
strain description: Unknown strain origin
age: immortalized
biomaterial_type: immortalized cell line
labversion: 1,Hotspot-v5.1,lmax-v1.0,WindowDensity-bin20-win+/-75
replicate: 1,3,2
strain description: Unknown strain origin
Biomaterial provider Weissman lab
Growth protocol MEL_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina Genome Analyzer
Data processing
Submission date Oct 03, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9185
Series (4)
GSE37074 DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
SRA SRX191049
BioSample SAMN01757959
Named Annotation GSM1014191_mm9_wgEncodeUwDnaseMelC57bl6MAdult8wksSigRep1.bigWig
Named Annotation GSM1014191_mm9_wgEncodeUwDnaseMelC57bl6MAdult8wksSigRep2.bigWig
Named Annotation GSM1014191_mm9_wgEncodeUwDnaseMelC57bl6MAdult8wksSigRep3.bigWig

Supplementary file Size Download File type/resource
GSM1014191_mm9_wgEncodeUwDnaseMelC57bl6MAdult8wksHotspotsRep1.broadPeak.gz 2.7 Mb (ftp)(http) BROADPEAK
GSM1014191_mm9_wgEncodeUwDnaseMelC57bl6MAdult8wksHotspotsRep2.broadPeak.gz 3.0 Mb (ftp)(http) BROADPEAK
GSM1014191_mm9_wgEncodeUwDnaseMelC57bl6MAdult8wksHotspotsRep3.broadPeak.gz 3.0 Mb (ftp)(http) BROADPEAK
GSM1014191_mm9_wgEncodeUwDnaseMelC57bl6MAdult8wksPkRep1.narrowPeak.gz 1.4 Mb (ftp)(http) NARROWPEAK
GSM1014191_mm9_wgEncodeUwDnaseMelC57bl6MAdult8wksPkRep2.narrowPeak.gz 1.6 Mb (ftp)(http) NARROWPEAK
GSM1014191_mm9_wgEncodeUwDnaseMelC57bl6MAdult8wksPkRep3.narrowPeak.gz 1.4 Mb (ftp)(http) NARROWPEAK
GSM1014191_mm9_wgEncodeUwDnaseMelC57bl6MAdult8wksSigRep1.bigWig 152.2 Mb (ftp)(http) BIGWIG
GSM1014191_mm9_wgEncodeUwDnaseMelC57bl6MAdult8wksSigRep2.bigWig 195.4 Mb (ftp)(http) BIGWIG
GSM1014191_mm9_wgEncodeUwDnaseMelC57bl6MAdult8wksSigRep3.bigWig 193.5 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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