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Sample GSM1014188 Query DataSets for GSM1014188
Status Public on Oct 03, 2012
Title UW_DnaseSeq_Retina_newborn-1days_C57BL/6
Sample type SRA
Source name Retina
Organism Mus musculus
Characteristics lab: UW-m
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseSeq
datatype description: DNaseI HS Sequencing
cell: Retina
cell organism: mouse
cell description: Retina
cell sex: M
age: newborn-1days
age description: Newborn 1 day
strain: C57BL/6
strain description: C57 black 6, the most common inbred strain of laboratory mouse
age: newborn-1days
age description: Newborn 1 day
labexpid: DS20004
labversion: 1,Hotspot-v5.2,lmax-v1.1,WindowDensity-bin20-win+/-75
replicate: 1
strain description: C57 black 6, the most common inbred strain of laboratory mouse
Biomaterial provider Stam lab
Growth protocol Retina_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina Genome Analyzer
Data processing
Submission date Oct 03, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9185
Series (2)
GSE37074 DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
SRA SRX191046
BioSample SAMN01757956
Named Annotation GSM1014188_mm9_wgEncodeUwDnaseRetinaC57bl6MNew1daysSigRep1.bigWig

Supplementary file Size Download File type/resource
GSM1014188_mm9_wgEncodeUwDnaseRetinaC57bl6MNew1daysHotspotsRep1.broadPeak.gz 3.0 Mb (ftp)(http) BROADPEAK
GSM1014188_mm9_wgEncodeUwDnaseRetinaC57bl6MNew1daysPkRep1.narrowPeak.gz 1.5 Mb (ftp)(http) NARROWPEAK
GSM1014188_mm9_wgEncodeUwDnaseRetinaC57bl6MNew1daysSigRep1.bigWig 166.2 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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