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Sample GSM1014185 Query DataSets for GSM1014185
Status Public on Oct 03, 2012
Title UW_DnaseSeq_Thymus_adult-8wks_C57BL/6
Sample type SRA
 
Source name Thymus
Organism Mus musculus
Characteristics lab: UW-m
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseSeq
datatype description: DNaseI HS Sequencing
biomaterial_type: tissue
donor_id: ENCDO072AAA
cell organism: mouse
tissue_type: thymus
Sex: M
age: adult-8wks
age description: Adult 8 weeks
strain: C57BL/6
strain description: C57 black 6, the most common inbred strain of laboratory mouse
age: adult-8wks
age description: Adult 8 weeks
labexpid: DS18890,DS18819
labversion: 1,Hotspot-v5.2,lmax-v1.1,WindowDensity-bin20-win+/-75
replicate: 1,2
strain description: C57 black 6, the most common inbred strain of laboratory mouse
Biomaterial provider 1)LICR lab; 2)CSHL lab
Growth protocol Thymus_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeUwDnase
 
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina Genome Analyzer
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeUwDnase
 
Submission date Oct 03, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9185
Series (3)
GSE37074 DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
GSE51336 Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution
Relations
SRA SRX191043
BioSample SAMN01757953
Named Annotation GSM1014185_mm9_wgEncodeUwDnaseThymusC57bl6MAdult8wksSigRep1.bigWig
Named Annotation GSM1014185_mm9_wgEncodeUwDnaseThymusC57bl6MAdult8wksSigRep2.bigWig

Supplementary file Size Download File type/resource
GSM1014185_mm9_wgEncodeUwDnaseThymusC57bl6MAdult8wksHotspotsRep1.broadPeak.gz 2.4 Mb (ftp)(http) BROADPEAK
GSM1014185_mm9_wgEncodeUwDnaseThymusC57bl6MAdult8wksHotspotsRep2.broadPeak.gz 2.4 Mb (ftp)(http) BROADPEAK
GSM1014185_mm9_wgEncodeUwDnaseThymusC57bl6MAdult8wksPkRep1.narrowPeak.gz 1.2 Mb (ftp)(http) NARROWPEAK
GSM1014185_mm9_wgEncodeUwDnaseThymusC57bl6MAdult8wksPkRep2.narrowPeak.gz 1.2 Mb (ftp)(http) NARROWPEAK
GSM1014185_mm9_wgEncodeUwDnaseThymusC57bl6MAdult8wksSigRep1.bigWig 138.8 Mb (ftp)(http) BIGWIG
GSM1014185_mm9_wgEncodeUwDnaseThymusC57bl6MAdult8wksSigRep2.bigWig 153.4 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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