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Sample GSM1014180 Query DataSets for GSM1014180
Status Public on Oct 03, 2012
Title UW_DnaseSeq_mG/ER_adult-8wks_diffProtC_48hr_C57BL/6
Sample type SRA
 
Source name mG/ER
Organism Mus musculus
Characteristics lab: UW-m
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseSeq
datatype description: DNaseI HS Sequencing
cell: mG/ER
cell organism: mouse
cell description: MEL-GATA-1-ER, This is a mouse suspension cell line derived from MEL cells by stable transfection with a GATA-1-ER fusion protein construct as described by Choe et al., 2003 (Cancer Res 63, 6363-6369, 2003). These cells can be terminally differentiated into mature erythroid cells with Β-estradiol treatment
cell sex: M
age: adult-8wks
age description: Adult 8 weeks
treatment: diffProtC_48hr
treatment description: 48 hour differentiation time point of mG/ER cells towards red blood cells after treatment with estradiol. Estradiol 10^-7 M final concentration (Stam)
strain: C57BL/6
strain description: C57 black 6, the most common inbred strain of laboratory mouse
age: adult-8wks
age description: Adult 8 weeks
labexpid: DS15420,DS15415
labversion: 1,Hotspot-v5.2,lmax-v1.1,WindowDensity-bin20-win+/-75
replicate: 1,2
strain description: C57 black 6, the most common inbred strain of laboratory mouse
Biomaterial provider Stam Lab
Treatment protocol diffProtC_48hr
Growth protocol mG-ER_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeUwDnase
 
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina Genome Analyzer
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeUwDnase
 
Submission date Oct 03, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9185
Series (2)
GSE37074 DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
Relations
SRA SRX191038
BioSample SAMN01757948
Named Annotation GSM1014180_mm9_wgEncodeUwDnaseMgerUknImmortalDiffc48hSigRep1.bigWig
Named Annotation GSM1014180_mm9_wgEncodeUwDnaseMgerUknImmortalDiffc48hSigRep2.bigWig

Supplementary file Size Download File type/resource
GSM1014180_mm9_wgEncodeUwDnaseMgerUknImmortalDiffc48hHotspotsRep1.broadPeak.gz 1.8 Mb (ftp)(http) BROADPEAK
GSM1014180_mm9_wgEncodeUwDnaseMgerUknImmortalDiffc48hHotspotsRep2.broadPeak.gz 2.6 Mb (ftp)(http) BROADPEAK
GSM1014180_mm9_wgEncodeUwDnaseMgerUknImmortalDiffc48hPkRep1.narrowPeak.gz 1.4 Mb (ftp)(http) NARROWPEAK
GSM1014180_mm9_wgEncodeUwDnaseMgerUknImmortalDiffc48hPkRep2.narrowPeak.gz 1.2 Mb (ftp)(http) NARROWPEAK
GSM1014180_mm9_wgEncodeUwDnaseMgerUknImmortalDiffc48hSigRep1.bigWig 113.0 Mb (ftp)(http) BIGWIG
GSM1014180_mm9_wgEncodeUwDnaseMgerUknImmortalDiffc48hSigRep2.bigWig 136.3 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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