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Sample GSM1014177 Query DataSets for GSM1014177
Status Public on Oct 03, 2012
Title UW_DnaseSeq_NIH-3T3_immortalized_NIH/Swiss
Sample type SRA
Source name NIH-3T3
Organism Mus musculus
Characteristics lab: UW-m
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseSeq
datatype description: DNaseI HS Sequencing
cell: NIH-3T3
cell organism: mouse
cell description: fibroblast
cell sex: M
age: immortalized
age description: Immortal cells
strain: NIH/Swiss
strain description: An outbred Swiss mouse used as a general-purpose stock. Used extensively for pertussis HSF testing.
age: immortalized
age description: Immortal cells
labexpid: DS16900
labversion: 1,Hotspot-v5.2,Hotspot-v5.1,lmax-v1.1,WindowDensity-bin20-win+/-75
replicate: 1,2
strain description: An outbred Swiss mouse used as a general-purpose stock. Used extensively for pertussis HSF testing.
Biomaterial provider ATCC
Growth protocol NIH-3T3_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina Genome Analyzer
Data processing
Submission date Oct 03, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9185
Series (4)
GSE37074 DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
SRA SRX191035
BioSample SAMN01757945
Named Annotation GSM1014177_mm9_wgEncodeUwDnaseNih3t3NihsMImmortalSigRep1.bigWig
Named Annotation GSM1014177_mm9_wgEncodeUwDnaseNih3t3NihsMImmortalSigRep2.bigWig

Supplementary file Size Download File type/resource
GSM1014177_mm9_wgEncodeUwDnaseNih3t3NihsMImmortalHotspotsRep1.broadPeak.gz 2.7 Mb (ftp)(http) BROADPEAK
GSM1014177_mm9_wgEncodeUwDnaseNih3t3NihsMImmortalHotspotsRep2.broadPeak.gz 3.7 Mb (ftp)(http) BROADPEAK
GSM1014177_mm9_wgEncodeUwDnaseNih3t3NihsMImmortalPkRep1.narrowPeak.gz 1.5 Mb (ftp)(http) NARROWPEAK
GSM1014177_mm9_wgEncodeUwDnaseNih3t3NihsMImmortalPkRep2.narrowPeak.gz 1.4 Mb (ftp)(http) NARROWPEAK
GSM1014177_mm9_wgEncodeUwDnaseNih3t3NihsMImmortalSigRep1.bigWig 141.6 Mb (ftp)(http) BIGWIG
GSM1014177_mm9_wgEncodeUwDnaseNih3t3NihsMImmortalSigRep2.bigWig 137.2 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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