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Sample GSM1014172 Query DataSets for GSM1014172
Status Public on Oct 03, 2012
Title UW_DnaseSeq_HeadlessEmbryo_E11.5_CD-1
Sample type SRA
 
Source name HeadlessEmbryo
Organism Mus musculus
Characteristics lab: UW-m
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseSeq
datatype description: DNaseI HS Sequencing
cell: HeadlessEmbryo
cell organism: mouse
cell description: Whole embryos with heads removed
cell sex: M
age: E11.5
age description: Embryonic day 11.5
strain: CD-1
strain description: Multipurpose mouse used for safety testing, aging studies, surgical models and pseudopregnancy.
age: E11.5
age description: Embryonic day 11.5
labexpid: DS17129
labversion: 1,Hotspot-v5.2,lmax-v1.1,WindowDensity-bin20-win+/-75
replicate: 1,2
strain description: Multipurpose mouse used for safety testing, aging studies, surgical models and pseudopregnancy.
Biomaterial provider Selleri lab, Cornell
Growth protocol HeadlessEmbryo_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeUwDnase
 
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina Genome Analyzer
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeUwDnase
 
Submission date Oct 03, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9185
Series (3)
GSE37074 DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
GSE51336 Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution
Relations
SRA SRX191030
BioSample SAMN01757940
Named Annotation GSM1014172_mm9_wgEncodeUwDnaseHlembryoCd1ME11halfSigRep1.bigWig
Named Annotation GSM1014172_mm9_wgEncodeUwDnaseHlembryoCd1ME11halfSigRep2.bigWig

Supplementary file Size Download File type/resource
GSM1014172_mm9_wgEncodeUwDnaseHlembryoCd1ME11halfHotspotsRep1.broadPeak.gz 4.3 Mb (ftp)(http) BROADPEAK
GSM1014172_mm9_wgEncodeUwDnaseHlembryoCd1ME11halfHotspotsRep2.broadPeak.gz 3.9 Mb (ftp)(http) BROADPEAK
GSM1014172_mm9_wgEncodeUwDnaseHlembryoCd1ME11halfPkRep1.narrowPeak.gz 1.7 Mb (ftp)(http) NARROWPEAK
GSM1014172_mm9_wgEncodeUwDnaseHlembryoCd1ME11halfPkRep2.narrowPeak.gz 1.5 Mb (ftp)(http) NARROWPEAK
GSM1014172_mm9_wgEncodeUwDnaseHlembryoCd1ME11halfSigRep1.bigWig 161.5 Mb (ftp)(http) BIGWIG
GSM1014172_mm9_wgEncodeUwDnaseHlembryoCd1ME11halfSigRep2.bigWig 140.0 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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