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Sample GSM1014167 Query DataSets for GSM1014167
Status Public on Oct 03, 2012
Title UW_DnaseSeq_A20_immortalized_BALB/cAnN
Sample type SRA
Source name A20
Organism Mus musculus
Characteristics lab: UW-m
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseSeq
datatype description: DNaseI HS Sequencing
cell: A20
cell organism: mouse
cell description: B cell lymphoma line derived from a spontaneous reticulum cell neoplasm
cell sex: M
age: immortalized
age description: Immortal cells
strain: BALB/cAnN
strain description: ccMyeloma high incidence H2d
age: immortalized
age description: Immortal cells
labversion: 1,Hotspot-v5.1,lmax-v1.1,WindowDensity-bin20-win+/-75
replicate: 1,2
strain description: ccMyeloma high incidence H2d
Biomaterial provider ATCC
Growth protocol A20_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina Genome Analyzer
Data processing
Submission date Oct 03, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9185
Series (3)
GSE37074 DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
GSE51336 Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution
SRA SRX191025
BioSample SAMN01757935
Named Annotation GSM1014167_mm9_wgEncodeUwDnaseA20BalbcannMAdult8wksSigRep1.bigWig
Named Annotation GSM1014167_mm9_wgEncodeUwDnaseA20BalbcannMAdult8wksSigRep2.bigWig

Supplementary file Size Download File type/resource
GSM1014167_mm9_wgEncodeUwDnaseA20BalbcannMAdult8wksHotspotsRep1.broadPeak.gz 2.9 Mb (ftp)(http) BROADPEAK
GSM1014167_mm9_wgEncodeUwDnaseA20BalbcannMAdult8wksHotspotsRep2.broadPeak.gz 4.0 Mb (ftp)(http) BROADPEAK
GSM1014167_mm9_wgEncodeUwDnaseA20BalbcannMAdult8wksPkRep1.narrowPeak.gz 1.4 Mb (ftp)(http) NARROWPEAK
GSM1014167_mm9_wgEncodeUwDnaseA20BalbcannMAdult8wksPkRep2.narrowPeak.gz 1.6 Mb (ftp)(http) NARROWPEAK
GSM1014167_mm9_wgEncodeUwDnaseA20BalbcannMAdult8wksSigRep1.bigWig 151.9 Mb (ftp)(http) BIGWIG
GSM1014167_mm9_wgEncodeUwDnaseA20BalbcannMAdult8wksSigRep2.bigWig 186.2 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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