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Sample GSM1014162 Query DataSets for GSM1014162
Status Public on Oct 03, 2012
Title UW_DnaseSeq_Liver_E14.5_129
Sample type SRA
Source name Liver
Organism Mus musculus
Characteristics lab: UW-m
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseSeq
datatype description: DNaseI HS Sequencing
cell: Liver
cell organism: mouse
cell description: Liver
cell sex: M
age: E14.5
age description: Embryonic day 14.5
strain: 129
strain description: Strain 129, has widely available embryonic stem cells
age: E14.5
age description: Embryonic day 14.5
labexpid: DS19246
labversion: 1,Hotspot-v5.2,lmax-v1.1,WindowDensity-bin20-win+/-75
replicate: 1
strain description: Strain 129, has widely available embryonic stem cells
Biomaterial provider 1)Stam lab; 2)CSHL lab
Growth protocol Tissue_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina Genome Analyzer
Data processing
Submission date Oct 03, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9185
Series (3)
GSE37074 DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
GSE51336 Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution
SRA SRX191020
BioSample SAMN01757930
Named Annotation GSM1014162_mm9_wgEncodeUwDnaseLiverS129ME14halfSigRep1.bigWig

Supplementary file Size Download File type/resource
GSM1014162_mm9_wgEncodeUwDnaseLiverS129ME14halfHotspotsRep1.broadPeak.gz 3.8 Mb (ftp)(http) BROADPEAK
GSM1014162_mm9_wgEncodeUwDnaseLiverS129ME14halfPkRep1.narrowPeak.gz 1.2 Mb (ftp)(http) NARROWPEAK
GSM1014162_mm9_wgEncodeUwDnaseLiverS129ME14halfSigRep1.bigWig 167.6 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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