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Sample GSM1014161 Query DataSets for GSM1014161
Status Public on Oct 03, 2012
Title UW_DnaseSeq_Liver_E14.5_129.DLCR/DLCR
Sample type SRA
 
Source name Liver
Organism Mus musculus
Characteristics lab: UW-m
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseSeq
datatype description: DNaseI HS Sequencing
cell: Liver
cell organism: mouse
cell description: Liver
cell sex: M
age: E14.5
age description: Embryonic day 14.5
strain: 129.DLCR/DLCR
strain description: 129 strain mouse with homozygous deletion of the beta-globin LCR region, see Bender et. al. (2000). Beta-globin gene switching and DNase I sensitivity of the endogenous beta-globin locus in mice do not require the locus control region.
age: E14.5
age description: Embryonic day 14.5
labexpid: DS19531,DS19241
labversion: 1,Hotspot-v5.2,lmax-v1.1,WindowDensity-bin20-win+/-75
replicate: 1,2
strain description: 129 strain mouse with homozygous deletion of the beta-globin LCR region, see Bender et. al. (2000). Beta-globin gene switching and DNase I sensitivity of the endogenous beta-globin locus in mice do not require the locus control region.
Biomaterial provider 1)Stam lab; 2)CSHL lab
Growth protocol Tissue_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeUwDnase
 
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina Genome Analyzer
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeUwDnase
 
Submission date Oct 03, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9185
Series (2)
GSE37074 DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
Relations
SRA SRX191019
BioSample SAMN01757929
Named Annotation GSM1014161_mm9_wgEncodeUwDnaseLiver129dlcrME14halfSigRep1.bigWig
Named Annotation GSM1014161_mm9_wgEncodeUwDnaseLiver129dlcrME14halfSigRep2.bigWig

Supplementary file Size Download File type/resource
GSM1014161_mm9_wgEncodeUwDnaseLiver129dlcrME14halfHotspotsRep1.broadPeak.gz 4.0 Mb (ftp)(http) BROADPEAK
GSM1014161_mm9_wgEncodeUwDnaseLiver129dlcrME14halfHotspotsRep2.broadPeak.gz 3.5 Mb (ftp)(http) BROADPEAK
GSM1014161_mm9_wgEncodeUwDnaseLiver129dlcrME14halfPkRep1.narrowPeak.gz 1.2 Mb (ftp)(http) NARROWPEAK
GSM1014161_mm9_wgEncodeUwDnaseLiver129dlcrME14halfPkRep2.narrowPeak.gz 1.2 Mb (ftp)(http) NARROWPEAK
GSM1014161_mm9_wgEncodeUwDnaseLiver129dlcrME14halfSigRep1.bigWig 184.1 Mb (ftp)(http) BIGWIG
GSM1014161_mm9_wgEncodeUwDnaseLiver129dlcrME14halfSigRep2.bigWig 174.3 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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