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Sample GSM1014160 Query DataSets for GSM1014160
Status Public on Oct 03, 2012
Title UW_DnaseSeq_ES-WW6_F1KO_E0_Unknown
Sample type SRA
Source name ES-WW6_F1KO
Organism Mus musculus
Characteristics lab: UW-m
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseSeq
datatype description: DNaseI HS Sequencing
cell: ES-WW6_F1KO
cell organism: mouse
cell description: Histone H1c, H1d, H1e triple null mouse embryonic stem cell line derived from ES-WW6 cells.
cell sex: M
age: E0
age description: Embryonic day 0 (stem cell)
strain: Unknown
strain description: Unknown strain origin
age: E0
age description: Embryonic day 0 (stem cell)
labexpid: DS17063,DS18365
labversion: 1,Hotspot-v5.2,lmax-v1.1,WindowDensity-bin20-win+/-75
replicate: 1,2
strain description: Unknown strain origin
Biomaterial provider A. Skoultchi Lab
Growth protocol ES-WW6_F1K0_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina Genome Analyzer
Data processing
Submission date Oct 03, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9185
Series (2)
GSE37074 DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
SRA SRX191018
BioSample SAMN01757928
Named Annotation GSM1014160_mm9_wgEncodeUwDnaseEsww6koUknME0SigRep1.bigWig
Named Annotation GSM1014160_mm9_wgEncodeUwDnaseEsww6koUknME0SigRep2.bigWig

Supplementary file Size Download File type/resource
GSM1014160_mm9_wgEncodeUwDnaseEsww6koUknME0HotspotsRep1.broadPeak.gz 3.4 Mb (ftp)(http) BROADPEAK
GSM1014160_mm9_wgEncodeUwDnaseEsww6koUknME0HotspotsRep2.broadPeak.gz 3.9 Mb (ftp)(http) BROADPEAK
GSM1014160_mm9_wgEncodeUwDnaseEsww6koUknME0PkRep1.narrowPeak.gz 2.1 Mb (ftp)(http) NARROWPEAK
GSM1014160_mm9_wgEncodeUwDnaseEsww6koUknME0PkRep2.narrowPeak.gz 1.9 Mb (ftp)(http) NARROWPEAK
GSM1014160_mm9_wgEncodeUwDnaseEsww6koUknME0SigRep1.bigWig 136.1 Mb (ftp)(http) BIGWIG
GSM1014160_mm9_wgEncodeUwDnaseEsww6koUknME0SigRep2.bigWig 129.4 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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