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Sample GSM1014160 Query DataSets for GSM1014160
Status Public on Oct 03, 2012
Title UW_DnaseSeq_ES-WW6_F1KO_E0_Unknown
Sample type SRA
 
Source name ES-WW6_F1KO
Organism Mus musculus
Characteristics lab: UW-m
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseSeq
datatype description: DNaseI HS Sequencing
cell: ES-WW6_F1KO
cell organism: mouse
cell description: Histone H1c, H1d, H1e triple null mouse embryonic stem cell line derived from ES-WW6 cells.
cell sex: M
age: E0
age description: Embryonic day 0 (stem cell)
strain: Unknown
strain description: Unknown strain origin
age: E0
age description: Embryonic day 0 (stem cell)
labexpid: DS17063,DS18365
labversion: 1,Hotspot-v5.2,lmax-v1.1,WindowDensity-bin20-win+/-75
replicate: 1,2
strain description: Unknown strain origin
Biomaterial provider A. Skoultchi Lab
Growth protocol ES-WW6_F1K0_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeUwDnase
 
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina Genome Analyzer
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeUwDnase
 
Submission date Oct 03, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9185
Series (2)
GSE37074 DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
Relations
SRA SRX191018
BioSample SAMN01757928
Named Annotation GSM1014160_mm9_wgEncodeUwDnaseEsww6koUknME0SigRep1.bigWig
Named Annotation GSM1014160_mm9_wgEncodeUwDnaseEsww6koUknME0SigRep2.bigWig

Supplementary file Size Download File type/resource
GSM1014160_mm9_wgEncodeUwDnaseEsww6koUknME0HotspotsRep1.broadPeak.gz 3.4 Mb (ftp)(http) BROADPEAK
GSM1014160_mm9_wgEncodeUwDnaseEsww6koUknME0HotspotsRep2.broadPeak.gz 3.9 Mb (ftp)(http) BROADPEAK
GSM1014160_mm9_wgEncodeUwDnaseEsww6koUknME0PkRep1.narrowPeak.gz 2.1 Mb (ftp)(http) NARROWPEAK
GSM1014160_mm9_wgEncodeUwDnaseEsww6koUknME0PkRep2.narrowPeak.gz 1.9 Mb (ftp)(http) NARROWPEAK
GSM1014160_mm9_wgEncodeUwDnaseEsww6koUknME0SigRep1.bigWig 136.1 Mb (ftp)(http) BIGWIG
GSM1014160_mm9_wgEncodeUwDnaseEsww6koUknME0SigRep2.bigWig 129.4 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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