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Sample GSM1014159 Query DataSets for GSM1014159
Status Public on Oct 03, 2012
Title UW_DnaseSeq_ES-WW6_E0_Unknown
Sample type SRA
Source name ES-WW6
Organism Mus musculus
Characteristics lab: UW-m
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseSeq
datatype description: DNaseI HS Sequencing
cell: ES-WW6
cell organism: mouse
cell description: ES-cells isolated from mix of ~20% C57/B6J, ~75% 129/Sv and ~5% SJL strains
cell sex: M
age: E0
age description: Embryonic day 0 (stem cell)
strain: Unknown
strain description: Unknown strain origin
age: E0
age description: Embryonic day 0 (stem cell)
labexpid: DS17060,DS17613
labversion: 1,Hotspot-v5.2,lmax-v1.1,WindowDensity-bin20-win+/-75
replicate: 1,2
strain description: Unknown strain origin
Biomaterial provider A. Skoultchi Lab
Growth protocol ES-WW6_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina Genome Analyzer
Data processing
Submission date Oct 03, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9185
Series (4)
GSE37074 DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
SRA SRX191017
BioSample SAMN01757927
Named Annotation GSM1014159_mm9_wgEncodeUwDnaseEsww6UknME0SigRep1.bigWig
Named Annotation GSM1014159_mm9_wgEncodeUwDnaseEsww6UknME0SigRep2.bigWig

Supplementary file Size Download File type/resource
GSM1014159_mm9_wgEncodeUwDnaseEsww6UknME0HotspotsRep1.broadPeak.gz 3.9 Mb (ftp)(http) BROADPEAK
GSM1014159_mm9_wgEncodeUwDnaseEsww6UknME0HotspotsRep2.broadPeak.gz 4.3 Mb (ftp)(http) BROADPEAK
GSM1014159_mm9_wgEncodeUwDnaseEsww6UknME0PkRep1.narrowPeak.gz 1.9 Mb (ftp)(http) NARROWPEAK
GSM1014159_mm9_wgEncodeUwDnaseEsww6UknME0PkRep2.narrowPeak.gz 1.6 Mb (ftp)(http) NARROWPEAK
GSM1014159_mm9_wgEncodeUwDnaseEsww6UknME0SigRep1.bigWig 135.9 Mb (ftp)(http) BIGWIG
GSM1014159_mm9_wgEncodeUwDnaseEsww6UknME0SigRep2.bigWig 152.6 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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