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Sample GSM1014157 Query DataSets for GSM1014157
Status Public on Oct 03, 2012
Title UW_DnaseSeq_EPC_(CD117+,CD71+,TER119+)_E14.5_CD-1
Sample type SRA
 
Source name EPC_(CD117+,CD71+,TER119+)
Organism Mus musculus
Characteristics lab: UW-m
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseSeq
datatype description: DNaseI HS Sequencing
cell: EPC_(CD117+,CD71+,TER119+)
cell organism: mouse
cell description: liver fraction CD117+,CD71+,TER119+
cell sex: M
age: E14.5
age description: Embryonic day 14.5
strain: CD-1
strain description: Multipurpose mouse used for safety testing, aging studies, surgical models and pseudopregnancy.
age: E14.5
age description: Embryonic day 14.5
labexpid: DS20999
labversion: 1,Hotspot-v5.2,lmax-v1.1,WindowDensity-bin20-win+/-75
replicate: 1
strain description: Multipurpose mouse used for safety testing, aging studies, surgical models and pseudopregnancy.
Biomaterial provider M. Bender, R. Byron (Fred Hutchinson Cancer Research Center)
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeUwDnase
 
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina Genome Analyzer
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeUwDnase
 
Submission date Oct 03, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9185
Series (3)
GSE37074 DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
GSE51336 Mouse regulatory DNA landscapes reveal global principles of cis-regulatory evolution
Relations
SRA SRX191015
BioSample SAMN01757925
Named Annotation GSM1014157_mm9_wgEncodeUwDnaseEpcpppCd1ME14halfSigRep1.bigWig

Supplementary file Size Download File type/resource
GSM1014157_mm9_wgEncodeUwDnaseEpcpppCd1ME14halfHotspotsRep1.broadPeak.gz 2.7 Mb (ftp)(http) BROADPEAK
GSM1014157_mm9_wgEncodeUwDnaseEpcpppCd1ME14halfPkRep1.narrowPeak.gz 1.3 Mb (ftp)(http) NARROWPEAK
GSM1014157_mm9_wgEncodeUwDnaseEpcpppCd1ME14halfSigRep1.bigWig 209.5 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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