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Sample GSM1014154 Query DataSets for GSM1014154
Status Public on Oct 03, 2012
Title UW_DnaseSeq_ES-E14_E0_129/Ola
Sample type SRA
 
Source name ES-E14
Organism Mus musculus
Characteristics lab: UW-m
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseSeq
datatype description: DNaseI HS Sequencing
line: ES-E14
cell organism: mouse
biomaterial_type: mouse embryonic stem cells
cell sex: M
age: E0
age description: Embryonic day 0 (stem cell)
strain: 129/Ola
strain description: The mice have yellow coats and late onset severe vacuolation in brain (700+ days). Inbred strain used as a control group to compare with null PrP mice.
age: E0
age description: Embryonic day 0 (stem cell)
labexpid: DS21450,DS18505
labversion: 1,Hotspot-v5.2,lmax-v1.1,WindowDensity-bin20-win+/-75
replicate: 1,2
strain description: The mice have yellow coats and late onset severe vacuolation in brain (700+ days). Inbred strain used as a control group to compare with null PrP mice.
Biomaterial provider Santos lab
Growth protocol ES-E14_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeUwDnase
 
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina Genome Analyzer
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeUwDnase
 
Submission date Oct 03, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9185
Series (4)
GSE37074 DNaseI Hypersensitivity by Digital DNaseI from ENCODE/University of Washington
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
Relations
Reanalyzed by GSE80795
SRA SRX191012
BioSample SAMN01757922
Named Annotation GSM1014154_mm9_wgEncodeUwDnaseEse14129olaME0SigRep1.bigWig
Named Annotation GSM1014154_mm9_wgEncodeUwDnaseEse14129olaME0SigRep2.bigWig

Supplementary file Size Download File type/resource
GSM1014154_mm9_wgEncodeUwDnaseEse14129olaME0HotspotsRep1.broadPeak.gz 3.6 Mb (ftp)(http) BROADPEAK
GSM1014154_mm9_wgEncodeUwDnaseEse14129olaME0HotspotsRep2.broadPeak.gz 4.1 Mb (ftp)(http) BROADPEAK
GSM1014154_mm9_wgEncodeUwDnaseEse14129olaME0PkRep1.narrowPeak.gz 2.0 Mb (ftp)(http) NARROWPEAK
GSM1014154_mm9_wgEncodeUwDnaseEse14129olaME0PkRep2.narrowPeak.gz 1.8 Mb (ftp)(http) NARROWPEAK
GSM1014154_mm9_wgEncodeUwDnaseEse14129olaME0SigRep1.bigWig 161.6 Mb (ftp)(http) BIGWIG
GSM1014154_mm9_wgEncodeUwDnaseEse14129olaME0SigRep2.bigWig 158.7 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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