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Sample GSM1010914 Query DataSets for GSM1010914
Status Public on Sep 28, 2012
Title UW_ChipSeq_AG04450_H3K9me3
Sample type SRA
Source name AG04450
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: AG04450
cell organism: human
cell description: fetal lung fibroblast
cell karyotype: normal
cell lineage: endoderm
cell sex: M
antibody: H3K9me3
antibody antibodydescription: rabbit polyclonal, ChIP grade. Antibody Target: H3K9me3
antibody targetdescription: Histone H3 (tri methyl K9). Is associated with repressive heterochromatic state (silenced chromatin). NOTE CONTRAST to H3K9me1 which is associated with active and accessible regions.
antibody vendorname: abcam
antibody vendorid: ab8898
treatment: None
treatment description: No special treatment or protocol applies
control: std
control description: Standard input signal for most experiments.
controlid: AG04450/None/Input/std
labexpid: DS21482,DS21481
labversion: Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75
replicate: 1,2
Biomaterial provider Coriell
Treatment protocol None
Growth protocol AG04450_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
Data processing
Submission date Sep 28, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9052
Series (1)
GSE35583 Histone Modifications by ChIP-seq from ENCODE/University of Washington
SRA SRX189941
BioSample SAMN01731420
Named Annotation GSM1010914_hg19_wgEncodeUwHistoneAg04450H3k09me3StdRawRep1.bigWig
Named Annotation GSM1010914_hg19_wgEncodeUwHistoneAg04450H3k09me3StdRawRep2.bigWig

Supplementary file Size Download File type/resource
GSM1010914_hg19_wgEncodeUwHistoneAg04450H3k09me3StdHotspotsRep1.broadPeak.gz 4.2 Mb (ftp)(http) BROADPEAK
GSM1010914_hg19_wgEncodeUwHistoneAg04450H3k09me3StdHotspotsRep2.broadPeak.gz 5.6 Mb (ftp)(http) BROADPEAK
GSM1010914_hg19_wgEncodeUwHistoneAg04450H3k09me3StdPkRep1.narrowPeak.gz 1.4 Mb (ftp)(http) NARROWPEAK
GSM1010914_hg19_wgEncodeUwHistoneAg04450H3k09me3StdPkRep2.narrowPeak.gz 1.7 Mb (ftp)(http) NARROWPEAK
GSM1010914_hg19_wgEncodeUwHistoneAg04450H3k09me3StdRawRep1.bigWig 75.9 Mb (ftp)(http) BIGWIG
GSM1010914_hg19_wgEncodeUwHistoneAg04450H3k09me3StdRawRep2.bigWig 115.1 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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