NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1010913 Query DataSets for GSM1010913
Status Public on Sep 28, 2012
Title UW_ChipSeq_AG04450_H3K27me3
Sample type SRA
 
Source name AG04450
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: AG04450
cell organism: human
cell description: fetal lung fibroblast
cell karyotype: normal
cell lineage: endoderm
cell sex: M
antibody: H3K27me3
antibody antibodydescription: rabbit polyclonal. Antibody Target: H3K27me3
antibody targetdescription: Histone H3 (tri-methyl K27). Marks promoters that are silenced by Polycomb proteins in a given lineage; large domains are found at inactive developmental loci.
antibody vendorname: Millipore
antibody vendorid: 07-449
treatment: None
treatment description: No special treatment or protocol applies
control: std
control description: Standard input signal for most experiments.
controlid: AG04450/None/Input/std
labexpid: DS21480
labversion: Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75
replicate: 1
Biomaterial provider Coriell
Treatment protocol None
Growth protocol AG04450_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwHistone
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeUwHistone
 
Submission date Sep 28, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9052
Series (1)
GSE35583 Histone Modifications by ChIP-seq from ENCODE/University of Washington
Relations
SRA SRX189940
BioSample SAMN01731419
Named Annotation GSM1010913_hg19_wgEncodeUwHistoneAg04450H3k27me3StdRawRep1.bigWig

Supplementary file Size Download File type/resource
GSM1010913_hg19_wgEncodeUwHistoneAg04450H3k27me3StdHotspotsRep1.broadPeak.gz 4.4 Mb (ftp)(http) BROADPEAK
GSM1010913_hg19_wgEncodeUwHistoneAg04450H3k27me3StdPkRep1.narrowPeak.gz 351.5 Kb (ftp)(http) NARROWPEAK
GSM1010913_hg19_wgEncodeUwHistoneAg04450H3k27me3StdRawRep1.bigWig 109.7 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap