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Sample GSM1010912 Query DataSets for GSM1010912
Status Public on Sep 28, 2012
Title UW_ChipSeq_AG04450_H3K27ac
Sample type SRA
Source name AG04450
Organism Homo sapiens
Characteristics lab: UW
lab description: Stamatoyannopoulous - University of Washington
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: AG04450
cell organism: human
cell description: fetal lung fibroblast
cell karyotype: normal
cell lineage: endoderm
cell sex: M
antibody: H3K27ac
antibody antibodydescription: rabbit polyclonal. Antibody Target: H3K27ac
antibody targetdescription: Histone H3 (acetyl K27). As with H3K9ac, associated with transcriptional initiation and open chromatin structure. It remains unknown whether acetylation has can have different consequences depending on the specific lysine residue targeted. In general, though, there appears to be high redundancy. Histone acetylation is notable for susceptibility to small molecules and drugs that target histone deacetylases.
antibody vendorname: abcam
antibody vendorid: ab4729
treatment: None
treatment description: No special treatment or protocol applies
control: std
control description: Standard input signal for most experiments.
controlid: AG04450/None/Input/std
labexpid: DS21479
labversion: Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75
replicate: 1
Biomaterial provider Coriell
Treatment protocol None
Growth protocol AG04450_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
Data processing
Submission date Sep 28, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9052
Series (1)
GSE35583 Histone Modifications by ChIP-seq from ENCODE/University of Washington
SRA SRX189939
BioSample SAMN01731418
Named Annotation GSM1010912_hg19_wgEncodeUwHistoneAg04450H3k27acStdRawRep1.bigWig

Supplementary file Size Download File type/resource
GSM1010912_hg19_wgEncodeUwHistoneAg04450H3k27acStdHotspotsRep1.broadPeak.gz 3.3 Mb (ftp)(http) BROADPEAK
GSM1010912_hg19_wgEncodeUwHistoneAg04450H3k27acStdPkRep1.narrowPeak.gz 1.1 Mb (ftp)(http) NARROWPEAK
GSM1010912_hg19_wgEncodeUwHistoneAg04450H3k27acStdRawRep1.bigWig 104.1 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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