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Sample GSM1010883 Query DataSets for GSM1010883
Status Public on Sep 28, 2012
Title HudsonAlpha_ChipSeq_SK-N-SH_RevXlinkChromatin_v042211.1
Sample type SRA
Source name SK-N-SH
Organism Homo sapiens
Characteristics datatype: ChipSeq
datatype description: Chromatin IP Sequencing
controlid: SL12791,SL16761,SL13505,SL16760
labexpid: SL12791,SL16761,SL13505,SL16760
cell: SK-N-SH
cell organism: human
cell description: neuroblastoma, newly promoted to tier 2: not in 2011 analysis, the SK-N-SH line was established from a neuroblastoma in a 4 year old individual.
cell karyotype: cancer
cell lineage: ectoderm
cell sex: F
antibody: RevXlinkChromatin
treatment: None
treatment description: No special treatment or protocol applies
protocol: v042211.1
protocol description: Faster ChIP protocol & AMpure XP size selection for ChIP-seq (Myers)
controlid: SL12791,SL16761,SL13505,SL16760
labexpid: SL12791,SL16761,SL13505,SL16760
replicate: 1,3,2,4
Biomaterial provider ATCC
Treatment protocol None
Growth protocol SK-N-SH_Myers_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
Data processing
Submission date Sep 28, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9052
Series (1)
GSE32465 Transcription Factor Binding Sites by ChIP-seq from ENCODE/HAIB
SRA SRX190339
BioSample SAMN01731768
Named Annotation GSM1010883_hg19_wgEncodeHaibTfbsSknshRxlchV0422111RawRep1.bigWig
Named Annotation GSM1010883_hg19_wgEncodeHaibTfbsSknshRxlchV0422111RawRep2.bigWig
Named Annotation GSM1010883_hg19_wgEncodeHaibTfbsSknshRxlchV0422111RawRep3.bigWig
Named Annotation GSM1010883_hg19_wgEncodeHaibTfbsSknshRxlchV0422111RawRep4.bigWig

Supplementary file Size Download File type/resource
GSM1010883_hg19_wgEncodeHaibTfbsSknshRxlchV0422111RawRep1.bigWig 138.7 Mb (ftp)(http) BIGWIG
GSM1010883_hg19_wgEncodeHaibTfbsSknshRxlchV0422111RawRep2.bigWig 210.0 Mb (ftp)(http) BIGWIG
GSM1010883_hg19_wgEncodeHaibTfbsSknshRxlchV0422111RawRep3.bigWig 212.0 Mb (ftp)(http) BIGWIG
GSM1010883_hg19_wgEncodeHaibTfbsSknshRxlchV0422111RawRep4.bigWig 127.4 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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