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Sample GSM1010883 Query DataSets for GSM1010883
Status Public on Sep 28, 2012
Title HudsonAlpha_ChipSeq_SK-N-SH_RevXlinkChromatin_v042211.1
Sample type SRA
 
Source name SK-N-SH
Organism Homo sapiens
Characteristics datatype: ChipSeq
datatype description: Chromatin IP Sequencing
controlid: SL12791,SL16761,SL13505,SL16760
labexpid: SL12791,SL16761,SL13505,SL16760
cell: SK-N-SH
cell organism: human
cell description: neuroblastoma, newly promoted to tier 2: not in 2011 analysis, the SK-N-SH line was established from a neuroblastoma in a 4 year old individual.
cell karyotype: cancer
cell lineage: ectoderm
cell sex: F
antibody: RevXlinkChromatin
treatment: None
treatment description: No special treatment or protocol applies
protocol: v042211.1
protocol description: Faster ChIP protocol & AMpure XP size selection for ChIP-seq (Myers)
controlid: SL12791,SL16761,SL13505,SL16760
labexpid: SL12791,SL16761,SL13505,SL16760
replicate: 1,3,2,4
Biomaterial provider ATCC
Treatment protocol None
Growth protocol SK-N-SH_Myers_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibTfbs
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibTfbs
 
Submission date Sep 28, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9052
Series (1)
GSE32465 Transcription Factor Binding Sites by ChIP-seq from ENCODE/HAIB
Relations
SRA SRX190339
BioSample SAMN01731768
Named Annotation GSM1010883_hg19_wgEncodeHaibTfbsSknshRxlchV0422111RawRep1.bigWig
Named Annotation GSM1010883_hg19_wgEncodeHaibTfbsSknshRxlchV0422111RawRep2.bigWig
Named Annotation GSM1010883_hg19_wgEncodeHaibTfbsSknshRxlchV0422111RawRep3.bigWig
Named Annotation GSM1010883_hg19_wgEncodeHaibTfbsSknshRxlchV0422111RawRep4.bigWig

Supplementary file Size Download File type/resource
GSM1010883_hg19_wgEncodeHaibTfbsSknshRxlchV0422111RawRep1.bigWig 138.7 Mb (ftp)(http) BIGWIG
GSM1010883_hg19_wgEncodeHaibTfbsSknshRxlchV0422111RawRep2.bigWig 210.0 Mb (ftp)(http) BIGWIG
GSM1010883_hg19_wgEncodeHaibTfbsSknshRxlchV0422111RawRep3.bigWig 212.0 Mb (ftp)(http) BIGWIG
GSM1010883_hg19_wgEncodeHaibTfbsSknshRxlchV0422111RawRep4.bigWig 127.4 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
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