NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1010854 Query DataSets for GSM1010854
Status Public on Sep 28, 2012
Title HudsonAlpha_ChipSeq_MCF-7_RevXlinkChromatin_v042211.1
Sample type SRA
 
Source name MCF-7
Organism Homo sapiens
Characteristics datatype: ChipSeq
datatype description: Chromatin IP Sequencing
controlid: SL16758,SL16757,SL13504,SL16756
labexpid: SL16758,SL16757,SL13504,SL16756
cell: MCF-7
cell organism: human
cell description: mammary gland, adenocarcinoma. (PMID: 4357757), newly promoted to tier 2: not in 2011 analysis
cell karyotype: cancer
cell lineage: ectoderm
cell sex: F
antibody: RevXlinkChromatin
treatment: None
treatment description: No special treatment or protocol applies
protocol: v042211.1
protocol description: Faster ChIP protocol & AMpure XP size selection for ChIP-seq (Myers)
controlid: SL16758,SL16757,SL13504,SL16756
labexpid: SL16758,SL16757,SL13504,SL16756
replicate: 1,3,2,4
Biomaterial provider ATCC
Treatment protocol None
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibTfbs
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibTfbs
 
Submission date Sep 28, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9052
Series (1)
GSE32465 Transcription Factor Binding Sites by ChIP-seq from ENCODE/HAIB
Relations
SRA SRX190310
BioSample SAMN01731739
Named Annotation GSM1010854_hg19_wgEncodeHaibTfbsMcf7RxlchV0422111RawRep1.bigWig
Named Annotation GSM1010854_hg19_wgEncodeHaibTfbsMcf7RxlchV0422111RawRep2.bigWig
Named Annotation GSM1010854_hg19_wgEncodeHaibTfbsMcf7RxlchV0422111RawRep3.bigWig
Named Annotation GSM1010854_hg19_wgEncodeHaibTfbsMcf7RxlchV0422111RawRep4.bigWig

Supplementary file Size Download File type/resource
GSM1010854_hg19_wgEncodeHaibTfbsMcf7RxlchV0422111RawRep1.bigWig 216.2 Mb (ftp)(http) BIGWIG
GSM1010854_hg19_wgEncodeHaibTfbsMcf7RxlchV0422111RawRep2.bigWig 146.6 Mb (ftp)(http) BIGWIG
GSM1010854_hg19_wgEncodeHaibTfbsMcf7RxlchV0422111RawRep3.bigWig 143.2 Mb (ftp)(http) BIGWIG
GSM1010854_hg19_wgEncodeHaibTfbsMcf7RxlchV0422111RawRep4.bigWig 203.0 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap