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Sample GSM1008566 Query DataSets for GSM1008566
Status Public on Sep 25, 2012
Title Duke_DnaseSeq_Frontal_cortex_OC
Sample type SRA
 
Source name Frontal_cortex_OC
Organism Homo sapiens
Characteristics datatype: DnaseSeq
datatype description: DNaseI HS Sequencing
labversion: baseAlignCounts.pl v 1,p-value cutoff: 0.05,fseq v 1.84, iff_generic_female
replicate: 1,2
cell: Frontal_cortex_OC
cell organism: human
cell description: Primary ventromedial prefrontal cortex, from KPBBB donor IDs 673 (Rep B1) and 913 (Rep B2)
cell karyotype: normal
cell sex: F
labversion: baseAlignCounts.pl v 1
Biomaterial provider Kathleen Price Bryan Brain
Growth protocol FrontalcortexOC_Crawford_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeOpenChromDnase
 
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina Genome Analyzer
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeOpenChromDnase
 
Submission date Sep 24, 2012
Last update date Aug 26, 2014
Contact name ENCODE DCC
E-mail encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL9052
Series (1)
GSE32970 Open Chromatin by DNaseI HS from ENCODE/OpenChrom(Duke University)
Relations
SRA SRX189396
BioSample SAMN01730088
Named Annotation GSM1008566_hg19_wgEncodeOpenChromDnaseFrontalcortexocBaseOverlapSignal.bigWig
Named Annotation GSM1008566_hg19_wgEncodeOpenChromDnaseFrontalcortexocSig.bigWig

Supplementary file Size Download File type/resource
GSM1008566_hg19_wgEncodeOpenChromDnaseFrontalcortexocBaseOverlapSignal.bigWig 1.5 Gb (ftp)(http) BIGWIG
GSM1008566_hg19_wgEncodeOpenChromDnaseFrontalcortexocPk.narrowPeak.gz 1.8 Mb (ftp)(http) NARROWPEAK
GSM1008566_hg19_wgEncodeOpenChromDnaseFrontalcortexocSig.bigWig 3.0 Gb (ftp)(http) BIGWIG
Raw data provided as supplementary file
Processed data provided as supplementary file

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