|
| Status |
Public on Sep 20, 2012 |
| Title |
UT-A_ChipSeq_GM10266_Input |
| Sample type |
SRA |
| |
|
| Source name |
GM10266
|
| Organism |
Homo sapiens |
| Characteristics |
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
controlid: wgEncodeEH003447
labversion: fseq v 1.84
cell: GM10266
cell organism: human
cell description: lymphoblastoid cell line, De Lange phenotype; developmental delay; profound retardation; seizures; 3 cousins are also affected; 46,XY,-22,+der (22)t(3;22)(q25.3;p12)
cell karyotype: affected
cell lineage: mesoderm
cell sex: M
antibody: Input
antibody description: Control signal which may be subtracted from experimental raw signal before peaks are called.
controlid: wgEncodeEH003447
|
| Biomaterial provider |
Coriell
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeOpenChromChip
|
| |
|
| Library strategy |
ChIP-Seq |
| Library source |
genomic |
| Library selection |
ChIP |
| Instrument model |
Illumina Genome Analyzer |
| |
|
| Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeOpenChromChip
|
| |
|
| Submission date |
Sep 20, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
encode-help@lists.stanford.edu
|
| Organization name |
ENCODE DCC
|
| Street address |
300 Pasteur Dr
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
| |
|
| Platform ID |
GPL9052 |
| Series (1) |
| GSE33213 |
Open Chromatin TFBS by ChIP-seq from ENCODE/Open Chrom(UT Austin) |
|
| Relations |
| SRA |
SRX188967 |
| BioSample |
SAMN01180316 |
| Named Annotation |
GSM1006890_hg19_wgEncodeOpenChromChipGm10266InputSig.bigWig |
