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Sample GSM1003832 Query DataSets for GSM1003832
Status Public on Sep 19, 2012
Title UW_DnaseDgf_Retina_newborn-1days
Sample type SRA
Source name Retina
Organism Mus musculus
Characteristics lab: UW-m
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseDgf
datatype description: DNase Digital Footprinting
cell: Retina
cell organism: mouse
cell description: Retina
cell sex: M
age: newborn-1days
age description: Newborn 1 day
age: newborn-1days
age description: Newborn 1 day
labexpid: DS20004
labversion: Hotspot-v5.2
replicate: 1
strain: C57BL/6
strain description: C57 black 6, the most common inbred strain of laboratory mouse
Biomaterial provider Stam lab
Growth protocol Retina_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol For more information, see
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina HiSeq 2000
Data processing
Submission date Sep 13, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL13112
Series (2)
GSE40869 DNaseI Digital Genomic Footprinting from ENCODE/University of Washington [Mouse]
GSE51341 Conservation of mouse-human trans-regulatory circuitry despite high cis-regulatory divergence
SRA SRX188659
BioSample SAMN01179406
Named Annotation GSM1003832_mm9_wgEncodeUwDgfRetinaC57bl6MNew1daysRawRep1.bigWig
Named Annotation GSM1003832_mm9_wgEncodeUwDgfRetinaC57bl6MNew1daysSigRep1.bigWig

Supplementary file Size Download File type/resource
GSM1003832_mm9_wgEncodeUwDgfRetinaC57bl6MNew1daysHotspotsRep1.broadPeak.gz 3.7 Mb (ftp)(http) BROADPEAK
GSM1003832_mm9_wgEncodeUwDgfRetinaC57bl6MNew1daysPkRep1.narrowPeak.gz 2.6 Mb (ftp)(http) NARROWPEAK
GSM1003832_mm9_wgEncodeUwDgfRetinaC57bl6MNew1daysRawRep1.bigWig 341.4 Mb (ftp)(http) BIGWIG
GSM1003832_mm9_wgEncodeUwDgfRetinaC57bl6MNew1daysSigRep1.bigWig 798.3 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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