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Sample GSM1003831 Query DataSets for GSM1003831
Status Public on Sep 19, 2012
Title UW_DnaseDgf_NIH-3T3_immortalized
Sample type SRA
Source name NIH-3T3
Organism Mus musculus
Characteristics lab: UW-m
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseDgf
datatype description: DNase Digital Footprinting
cell: NIH-3T3
cell organism: mouse
cell description: fibroblast
cell sex: M
age: immortalized
age description: Immortal cells
age: immortalized
age description: Immortal cells
labexpid: DS16900
labversion: Hotspot-v5.2
replicate: 1
strain: NIH/Swiss
strain description: An outbred Swiss mouse used as a general-purpose stock. Used extensively for pertussis HSF testing.
Biomaterial provider ATCC
Growth protocol NIH-3T3_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol For more information, see
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina HiSeq 2000
Data processing
Submission date Sep 13, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL13112
Series (2)
GSE40869 DNaseI Digital Genomic Footprinting from ENCODE/University of Washington [Mouse]
GSE51341 Conservation of mouse-human trans-regulatory circuitry despite high cis-regulatory divergence
SRA SRX188658
BioSample SAMN01179405
Named Annotation GSM1003831_mm9_wgEncodeUwDgfNih3t3NihsMImmortalRawRep1.bigWig
Named Annotation GSM1003831_mm9_wgEncodeUwDgfNih3t3NihsMImmortalSigRep1.bigWig

Supplementary file Size Download File type/resource
GSM1003831_mm9_wgEncodeUwDgfNih3t3NihsMImmortalHotspotsRep1.broadPeak.gz 3.6 Mb (ftp)(http) BROADPEAK
GSM1003831_mm9_wgEncodeUwDgfNih3t3NihsMImmortalPkRep1.narrowPeak.gz 2.6 Mb (ftp)(http) NARROWPEAK
GSM1003831_mm9_wgEncodeUwDgfNih3t3NihsMImmortalRawRep1.bigWig 338.8 Mb (ftp)(http) BIGWIG
GSM1003831_mm9_wgEncodeUwDgfNih3t3NihsMImmortalSigRep1.bigWig 764.2 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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