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Sample GSM1003831 Query DataSets for GSM1003831
Status Public on Sep 19, 2012
Title UW_DnaseDgf_NIH-3T3_immortalized
Sample type SRA
 
Source name NIH-3T3
Organism Mus musculus
Characteristics lab: UW-m
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseDgf
datatype description: DNase Digital Footprinting
cell: NIH-3T3
cell organism: mouse
cell description: fibroblast
cell sex: M
age: immortalized
age description: Immortal cells
age: immortalized
age description: Immortal cells
labexpid: DS16900
labversion: Hotspot-v5.2
replicate: 1
strain: NIH/Swiss
strain description: An outbred Swiss mouse used as a general-purpose stock. Used extensively for pertussis HSF testing.
Biomaterial provider ATCC
Growth protocol NIH-3T3_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeUwDgf
 
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina HiSeq 2000
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeUwDgf
 
Submission date Sep 13, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL13112
Series (2)
GSE40869 DNaseI Digital Genomic Footprinting from ENCODE/University of Washington [Mouse]
GSE51341 Conservation of mouse-human trans-regulatory circuitry despite high cis-regulatory divergence
Relations
SRA SRX188658
BioSample SAMN01179405
Named Annotation GSM1003831_mm9_wgEncodeUwDgfNih3t3NihsMImmortalRawRep1.bigWig
Named Annotation GSM1003831_mm9_wgEncodeUwDgfNih3t3NihsMImmortalSigRep1.bigWig

Supplementary file Size Download File type/resource
GSM1003831_mm9_wgEncodeUwDgfNih3t3NihsMImmortalHotspotsRep1.broadPeak.gz 3.6 Mb (ftp)(http) BROADPEAK
GSM1003831_mm9_wgEncodeUwDgfNih3t3NihsMImmortalPkRep1.narrowPeak.gz 2.6 Mb (ftp)(http) NARROWPEAK
GSM1003831_mm9_wgEncodeUwDgfNih3t3NihsMImmortalRawRep1.bigWig 338.8 Mb (ftp)(http) BIGWIG
GSM1003831_mm9_wgEncodeUwDgfNih3t3NihsMImmortalSigRep1.bigWig 764.2 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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