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Sample GSM1003830 Query DataSets for GSM1003830
Status Public on Sep 19, 2012
Title UW_DnaseDgf_ES-CJ7_E0
Sample type SRA
Source name ES-CJ7
Organism Mus musculus
Characteristics lab: UW-m
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseDgf
datatype description: DNase Digital Footprinting
cell: ES-CJ7
cell organism: mouse
cell description: ES-cells were originally isolated from 129S1/SVImJ mice by Swiatek PJ et al. in 1993 ("Perinatal lethality and defects in hindbrain development in mice homozygous for a targeted mutation of the zinc finger gene Krox20". Swiatek PJ, Gridley T. Genes Dev. 1993 Nov,7(11):2071-84.)
cell sex: M
age: E0
age description: Embryonic day 0 (stem cell)
age: E0
age description: Embryonic day 0 (stem cell)
labexpid: DS13320
labversion: Hotspot-v5.2
replicate: 1
strain: 129S1/SVImJ
strain description: Control inbred strain of the steel-derived ES cells.
Biomaterial provider Stam lab
Growth protocol ES-CJ7_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol For more information, see
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina HiSeq 2000
Data processing
Submission date Sep 13, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL13112
Series (2)
GSE40869 DNaseI Digital Genomic Footprinting from ENCODE/University of Washington [Mouse]
GSE51341 Conservation of mouse-human trans-regulatory circuitry despite high cis-regulatory divergence
SRA SRX188657
BioSample SAMN01179404
Named Annotation GSM1003830_mm9_wgEncodeUwDgfEscj7129s1ME0RawRep1.bigWig
Named Annotation GSM1003830_mm9_wgEncodeUwDgfEscj7129s1ME0SigRep1.bigWig

Supplementary file Size Download File type/resource
GSM1003830_mm9_wgEncodeUwDgfEscj7129s1ME0HotspotsRep1.broadPeak.gz 5.9 Mb (ftp)(http) BROADPEAK
GSM1003830_mm9_wgEncodeUwDgfEscj7129s1ME0PkRep1.narrowPeak.gz 3.7 Mb (ftp)(http) NARROWPEAK
GSM1003830_mm9_wgEncodeUwDgfEscj7129s1ME0RawRep1.bigWig 331.6 Mb (ftp)(http) BIGWIG
GSM1003830_mm9_wgEncodeUwDgfEscj7129s1ME0SigRep1.bigWig 697.4 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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