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Sample GSM1003829 Query DataSets for GSM1003829
Status Public on Sep 19, 2012
Title UW_DnaseDgf_A20_immortalized
Sample type SRA
Source name A20
Organism Mus musculus
Characteristics lab: UW-m
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseDgf
datatype description: DNase Digital Footprinting
cell: A20
cell organism: mouse
cell description: B cell lymphoma line derived from a spontaneous reticulum cell neoplasm
cell sex: M
age: immortalized
age description: Immortal cells
age: immortalized
age description: Immortal cells
labexpid: DS16695
labversion: Hotspot-v5.2
replicate: 1
strain: BALB/cAnN
strain description: ccMyeloma high incidence H2d
Biomaterial provider ATCC
Growth protocol A20_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol For more information, see
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina HiSeq 2000
Data processing
Submission date Sep 13, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL13112
Series (2)
GSE40869 DNaseI Digital Genomic Footprinting from ENCODE/University of Washington [Mouse]
GSE51341 Conservation of mouse-human trans-regulatory circuitry despite high cis-regulatory divergence
SRA SRX188656
BioSample SAMN01179403
Named Annotation GSM1003829_mm9_wgEncodeUwDgfA20BalbcannMImmortalRawRep1.bigWig
Named Annotation GSM1003829_mm9_wgEncodeUwDgfA20BalbcannMImmortalSigRep1.bigWig

Supplementary file Size Download File type/resource
GSM1003829_mm9_wgEncodeUwDgfA20BalbcannMImmortalHotspotsRep1.broadPeak.gz 3.1 Mb (ftp)(http) BROADPEAK
GSM1003829_mm9_wgEncodeUwDgfA20BalbcannMImmortalPkRep1.narrowPeak.gz 2.2 Mb (ftp)(http) NARROWPEAK
GSM1003829_mm9_wgEncodeUwDgfA20BalbcannMImmortalRawRep1.bigWig 322.1 Mb (ftp)(http) BIGWIG
GSM1003829_mm9_wgEncodeUwDgfA20BalbcannMImmortalSigRep1.bigWig 662.5 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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