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Sample GSM1003828 Query DataSets for GSM1003828
Status Public on Sep 19, 2012
Title UW_DnaseDgf_WholeBrain_E14.5
Sample type SRA
Source name WholeBrain
Organism Mus musculus
Characteristics lab: UW-m
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseDgf
datatype description: DNase Digital Footprinting
cell: WholeBrain
cell organism: mouse
cell description: Whole Brain
cell sex: M
age: E14.5
age description: Embryonic day 14.5
age: E14.5
age description: Embryonic day 14.5
labexpid: DS14536
labversion: Hotspot-v5.2
replicate: 1
strain: C57BL/6
strain description: C57 black 6, the most common inbred strain of laboratory mouse
Biomaterial provider 1)Stam lab; 2)CSHL lab
Growth protocol Tissue_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol For more information, see
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina HiSeq 2000
Data processing
Submission date Sep 13, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL13112
Series (2)
GSE40869 DNaseI Digital Genomic Footprinting from ENCODE/University of Washington [Mouse]
GSE51341 Conservation of mouse-human trans-regulatory circuitry despite high cis-regulatory divergence
SRA SRX188655
BioSample SAMN01179402
Named Annotation GSM1003828_mm9_wgEncodeUwDgfWbrainC57bl6ME14halfRawRep1.bigWig
Named Annotation GSM1003828_mm9_wgEncodeUwDgfWbrainC57bl6ME14halfSigRep1.bigWig

Supplementary file Size Download File type/resource
GSM1003828_mm9_wgEncodeUwDgfWbrainC57bl6ME14halfHotspotsRep1.broadPeak.gz 4.2 Mb (ftp)(http) BROADPEAK
GSM1003828_mm9_wgEncodeUwDgfWbrainC57bl6ME14halfPkRep1.narrowPeak.gz 3.2 Mb (ftp)(http) NARROWPEAK
GSM1003828_mm9_wgEncodeUwDgfWbrainC57bl6ME14halfRawRep1.bigWig 333.0 Mb (ftp)(http) BIGWIG
GSM1003828_mm9_wgEncodeUwDgfWbrainC57bl6ME14halfSigRep1.bigWig 707.9 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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