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Sample GSM1003824 Query DataSets for GSM1003824
Status Public on Sep 19, 2012
Title UW_DnaseDgf_MEL_immortalized
Sample type SRA
Source name MEL
Organism Mus musculus
Characteristics lab: UW-m
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseDgf
datatype description: DNase Digital Footprinting
cell: MEL
cell organism: mouse
cell description: Leukemia (K562 analog)
cell sex: M
age: immortalized
age description: Immortal cells
age: immortalized
age description: Immortal cells
labexpid: DS13036
labversion: Hotspot-v5.2
replicate: 1
strain: Unknown
strain description: Unknown strain origin
Biomaterial provider Weissman lab
Growth protocol MEL_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol For more information, see
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina HiSeq 2000
Data processing
Submission date Sep 13, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL13112
Series (2)
GSE40869 DNaseI Digital Genomic Footprinting from ENCODE/University of Washington [Mouse]
GSE51341 Conservation of mouse-human trans-regulatory circuitry despite high cis-regulatory divergence
SRA SRX188651
BioSample SAMN01179398
Named Annotation GSM1003824_mm9_wgEncodeUwDgfMelUknImmortalRawRep1.bigWig
Named Annotation GSM1003824_mm9_wgEncodeUwDgfMelUknImmortalSigRep1.bigWig

Supplementary file Size Download File type/resource
GSM1003824_mm9_wgEncodeUwDgfMelUknImmortalHotspotsRep1.broadPeak.gz 2.8 Mb (ftp)(http) BROADPEAK
GSM1003824_mm9_wgEncodeUwDgfMelUknImmortalPkRep1.narrowPeak.gz 2.2 Mb (ftp)(http) NARROWPEAK
GSM1003824_mm9_wgEncodeUwDgfMelUknImmortalRawRep1.bigWig 319.8 Mb (ftp)(http) BIGWIG
GSM1003824_mm9_wgEncodeUwDgfMelUknImmortalSigRep1.bigWig 664.4 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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