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Sample GSM1003822 Query DataSets for GSM1003822
Status Public on Sep 19, 2012
Title UW_DnaseDgf_ZhBTc4_E0_DS17616
Sample type SRA
 
Source name ZhBTc4
Organism Mus musculus
Characteristics lab: UW-m
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseDgf
datatype description: DNase Digital Footprinting
cell: ZhBTc4
cell organism: mouse
cell description: Undifferentiated mouse embryonic stem cells
cell sex: M
age: E0
age description: Embryonic day 0 (stem cell)
age: E0
age description: Embryonic day 0 (stem cell)
labexpid: DS17616
labversion: Hotspot-v5.2
replicate: 1
strain: 129/Ola
strain description: The mice have yellow coats and late onset severe vacuolation in brain (700+ days). Inbred strain used as a control group to compare with null PrP mice.
Biomaterial provider Dr. Levasseur (University of Iowa)
Growth protocol ZhBTc4_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeUwDgf
 
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina HiSeq 2000
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeUwDgf
 
Submission date Sep 13, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL13112
Series (2)
GSE40869 DNaseI Digital Genomic Footprinting from ENCODE/University of Washington [Mouse]
GSE51341 Conservation of mouse-human trans-regulatory circuitry despite high cis-regulatory divergence
Relations
SRA SRX188649
BioSample SAMN01179396
Named Annotation GSM1003822_mm9_wgEncodeUwDgfZhbtc4129olaME0RawRep1.bigWig
Named Annotation GSM1003822_mm9_wgEncodeUwDgfZhbtc4129olaME0SigRep1.bigWig

Supplementary file Size Download File type/resource
GSM1003822_mm9_wgEncodeUwDgfZhbtc4129olaME0HotspotsRep1.broadPeak.gz 4.0 Mb (ftp)(http) BROADPEAK
GSM1003822_mm9_wgEncodeUwDgfZhbtc4129olaME0PkRep1.narrowPeak.gz 3.0 Mb (ftp)(http) NARROWPEAK
GSM1003822_mm9_wgEncodeUwDgfZhbtc4129olaME0RawRep1.bigWig 311.6 Mb (ftp)(http) BIGWIG
GSM1003822_mm9_wgEncodeUwDgfZhbtc4129olaME0SigRep1.bigWig 587.7 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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