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Sample GSM1003822 Query DataSets for GSM1003822
Status Public on Sep 19, 2012
Title UW_DnaseDgf_ZhBTc4_E0_DS17616
Sample type SRA
Source name ZhBTc4
Organism Mus musculus
Characteristics lab: UW-m
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseDgf
datatype description: DNase Digital Footprinting
cell: ZhBTc4
cell organism: mouse
cell description: Undifferentiated mouse embryonic stem cells
cell sex: M
age: E0
age description: Embryonic day 0 (stem cell)
age: E0
age description: Embryonic day 0 (stem cell)
labexpid: DS17616
labversion: Hotspot-v5.2
replicate: 1
strain: 129/Ola
strain description: The mice have yellow coats and late onset severe vacuolation in brain (700+ days). Inbred strain used as a control group to compare with null PrP mice.
Biomaterial provider Dr. Levasseur (University of Iowa)
Growth protocol ZhBTc4_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol For more information, see
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina HiSeq 2000
Data processing
Submission date Sep 13, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL13112
Series (2)
GSE40869 DNaseI Digital Genomic Footprinting from ENCODE/University of Washington [Mouse]
GSE51341 Conservation of mouse-human trans-regulatory circuitry despite high cis-regulatory divergence
SRA SRX188649
BioSample SAMN01179396
Named Annotation GSM1003822_mm9_wgEncodeUwDgfZhbtc4129olaME0RawRep1.bigWig
Named Annotation GSM1003822_mm9_wgEncodeUwDgfZhbtc4129olaME0SigRep1.bigWig

Supplementary file Size Download File type/resource
GSM1003822_mm9_wgEncodeUwDgfZhbtc4129olaME0HotspotsRep1.broadPeak.gz 4.0 Mb (ftp)(http) BROADPEAK
GSM1003822_mm9_wgEncodeUwDgfZhbtc4129olaME0PkRep1.narrowPeak.gz 3.0 Mb (ftp)(http) NARROWPEAK
GSM1003822_mm9_wgEncodeUwDgfZhbtc4129olaME0RawRep1.bigWig 311.6 Mb (ftp)(http) BIGWIG
GSM1003822_mm9_wgEncodeUwDgfZhbtc4129olaME0SigRep1.bigWig 587.7 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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