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Sample GSM1003819 Query DataSets for GSM1003819
Status Public on Sep 19, 2012
Title UW_DnaseDgf_Kidney_adult-8wks
Sample type SRA
Source name Kidney
Organism Mus musculus
Characteristics lab: UW-m
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseDgf
datatype description: DNase Digital Footprinting
cell: Kidney
cell organism: mouse
cell description: Kidney
cell sex: M
age: adult-8wks
age description: Adult 8 weeks
age: adult-8wks
age description: Adult 8 weeks
labexpid: DS13948
labversion: Hotspot-v5.2
replicate: 1
strain: C57BL/6
strain description: C57 black 6, the most common inbred strain of laboratory mouse
Biomaterial provider 1)Stam lab ; 2)CSHL lab
Growth protocol Tissue_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol For more information, see
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina HiSeq 2000
Data processing
Submission date Sep 13, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL13112
Series (2)
GSE40869 DNaseI Digital Genomic Footprinting from ENCODE/University of Washington [Mouse]
GSE51341 Conservation of mouse-human trans-regulatory circuitry despite high cis-regulatory divergence
SRA SRX188646
BioSample SAMN01179393
Named Annotation GSM1003819_mm9_wgEncodeUwDgfKidneyC57bl6MAdult8wksRawRep1.bigWig
Named Annotation GSM1003819_mm9_wgEncodeUwDgfKidneyC57bl6MAdult8wksSigRep1.bigWig

Supplementary file Size Download File type/resource
GSM1003819_mm9_wgEncodeUwDgfKidneyC57bl6MAdult8wksHotspotsRep1.broadPeak.gz 3.6 Mb (ftp)(http) BROADPEAK
GSM1003819_mm9_wgEncodeUwDgfKidneyC57bl6MAdult8wksPkRep1.narrowPeak.gz 2.8 Mb (ftp)(http) NARROWPEAK
GSM1003819_mm9_wgEncodeUwDgfKidneyC57bl6MAdult8wksRawRep1.bigWig 313.9 Mb (ftp)(http) BIGWIG
GSM1003819_mm9_wgEncodeUwDgfKidneyC57bl6MAdult8wksSigRep1.bigWig 548.7 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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