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Sample GSM1003818 Query DataSets for GSM1003818
Status Public on Sep 19, 2012
Title UW_DnaseDgf_Liver_adult-8wks
Sample type SRA
Source name Liver
Organism Mus musculus
Characteristics lab: UW-m
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseDgf
datatype description: DNase Digital Footprinting
cell: Liver
cell organism: mouse
cell description: Liver
cell sex: M
age: adult-8wks
age description: Adult 8 weeks
age: adult-8wks
age description: Adult 8 weeks
labexpid: DS14605
labversion: Hotspot-v5.2
replicate: 1
strain: C57BL/6
strain description: C57 black 6, the most common inbred strain of laboratory mouse
Biomaterial provider 1)Stam lab; 2)CSHL lab
Growth protocol Tissue_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol For more information, see
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina Genome Analyzer II
Data processing
Submission date Sep 13, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9250
Series (2)
GSE40869 DNaseI Digital Genomic Footprinting from ENCODE/University of Washington [Mouse]
GSE51341 Conservation of mouse-human trans-regulatory circuitry despite high cis-regulatory divergence
SRA SRX188645
BioSample SAMN01179392
Named Annotation GSM1003818_mm9_wgEncodeUwDgfLiverC57bl6MAdult8wksRawRep1.bigWig
Named Annotation GSM1003818_mm9_wgEncodeUwDgfLiverC57bl6MAdult8wksSigRep1.bigWig

Supplementary file Size Download File type/resource
GSM1003818_mm9_wgEncodeUwDgfLiverC57bl6MAdult8wksHotspotsRep1.broadPeak.gz 2.4 Mb (ftp)(http) BROADPEAK
GSM1003818_mm9_wgEncodeUwDgfLiverC57bl6MAdult8wksPkRep1.narrowPeak.gz 2.0 Mb (ftp)(http) NARROWPEAK
GSM1003818_mm9_wgEncodeUwDgfLiverC57bl6MAdult8wksRawRep1.bigWig 285.1 Mb (ftp)(http) BIGWIG
GSM1003818_mm9_wgEncodeUwDgfLiverC57bl6MAdult8wksSigRep1.bigWig 397.1 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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