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Sample GSM1003815 Query DataSets for GSM1003815
Status Public on Sep 19, 2012
Title UW_DnaseDgf_416B_immortalized
Sample type SRA
Source name 416B
Organism Mus musculus
Characteristics lab: UW-m
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseDgf
datatype description: DNase Digital Footprinting
cell: 416B
cell organism: mouse
cell description: myeloid progenitor cells, CD34+
cell sex: M
age: immortalized
age description: Immortal cells
age: immortalized
age description: Immortal cells
labexpid: DS14099
labversion: Hotspot-v5.2
replicate: 1
strain: B6D2F1/J
strain description: Derived from cross between C57BL/6J Female x DBA/2J Male (C57BL/6xDBA/2)F1.
Biomaterial provider Stam lab
Growth protocol 416B_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol For more information, see
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina HiSeq 2000
Data processing
Submission date Sep 13, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL13112
Series (2)
GSE40869 DNaseI Digital Genomic Footprinting from ENCODE/University of Washington [Mouse]
GSE51341 Conservation of mouse-human trans-regulatory circuitry despite high cis-regulatory divergence
SRA SRX188642
BioSample SAMN01179389
Named Annotation GSM1003815_mm9_wgEncodeUwDgf416bB6d2f1jImmortalRawRep1.bigWig
Named Annotation GSM1003815_mm9_wgEncodeUwDgf416bB6d2f1jImmortalSigRep1.bigWig

Supplementary file Size Download File type/resource
GSM1003815_mm9_wgEncodeUwDgf416bB6d2f1jImmortalHotspotsRep1.broadPeak.gz 2.6 Mb (ftp)(http) BROADPEAK
GSM1003815_mm9_wgEncodeUwDgf416bB6d2f1jImmortalPkRep1.narrowPeak.gz 2.1 Mb (ftp)(http) NARROWPEAK
GSM1003815_mm9_wgEncodeUwDgf416bB6d2f1jImmortalRawRep1.bigWig 303.2 Mb (ftp)(http) BIGWIG
GSM1003815_mm9_wgEncodeUwDgf416bB6d2f1jImmortalSigRep1.bigWig 499.1 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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