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Sample GSM1003815 Query DataSets for GSM1003815
Status Public on Sep 19, 2012
Title UW_DnaseDgf_416B_immortalized
Sample type SRA
 
Source name 416B
Organism Mus musculus
Characteristics lab: UW-m
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseDgf
datatype description: DNase Digital Footprinting
cell: 416B
cell organism: mouse
cell description: myeloid progenitor cells, CD34+
cell sex: M
age: immortalized
age description: Immortal cells
age: immortalized
age description: Immortal cells
labexpid: DS14099
labversion: Hotspot-v5.2
replicate: 1
strain: B6D2F1/J
strain description: Derived from cross between C57BL/6J Female x DBA/2J Male (C57BL/6xDBA/2)F1.
Biomaterial provider Stam lab
Growth protocol 416B_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeUwDgf
 
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina HiSeq 2000
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeUwDgf
 
Submission date Sep 13, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL13112
Series (2)
GSE40869 DNaseI Digital Genomic Footprinting from ENCODE/University of Washington [Mouse]
GSE51341 Conservation of mouse-human trans-regulatory circuitry despite high cis-regulatory divergence
Relations
SRA SRX188642
BioSample SAMN01179389
Named Annotation GSM1003815_mm9_wgEncodeUwDgf416bB6d2f1jImmortalRawRep1.bigWig
Named Annotation GSM1003815_mm9_wgEncodeUwDgf416bB6d2f1jImmortalSigRep1.bigWig

Supplementary file Size Download File type/resource
GSM1003815_mm9_wgEncodeUwDgf416bB6d2f1jImmortalHotspotsRep1.broadPeak.gz 2.6 Mb (ftp)(http) BROADPEAK
GSM1003815_mm9_wgEncodeUwDgf416bB6d2f1jImmortalPkRep1.narrowPeak.gz 2.1 Mb (ftp)(http) NARROWPEAK
GSM1003815_mm9_wgEncodeUwDgf416bB6d2f1jImmortalRawRep1.bigWig 303.2 Mb (ftp)(http) BIGWIG
GSM1003815_mm9_wgEncodeUwDgf416bB6d2f1jImmortalSigRep1.bigWig 499.1 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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