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Sample GSM1003813 Query DataSets for GSM1003813
Status Public on Sep 19, 2012
Title UW_DnaseDgf_B-cell_(CD43-)_adult-8wks
Sample type SRA
Source name B-cell_(CD43-)
Organism Mus musculus
Characteristics lab: UW-m
lab description: Stamatoyannopoulous - University of Washington
datatype: DnaseDgf
datatype description: DNase Digital Footprinting
cell: B-cell_(CD43-)
cell organism: mouse
cell description: mouse spleen B cells, CD43-,CD11b-
cell sex: M
age: adult-8wks
age description: Adult 8 weeks
age: adult-8wks
age description: Adult 8 weeks
labexpid: DS17866
labversion: Hotspot-v5.2
replicate: 1
strain: C57BL/6
strain description: C57 black 6, the most common inbred strain of laboratory mouse
Biomaterial provider M. Bender (FHCRC)
Growth protocol bCellCd43_Stam_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol For more information, see
Library strategy DNase-Hypersensitivity
Library source genomic
Library selection DNAse
Instrument model Illumina HiSeq 2000
Description SRR574026, which is associated with SRX188640/GSM1003813, and SRR579076, which is associated with SRX191028/GSM1014170, are the same runs.
Data processing
Submission date Sep 13, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL13112
Series (2)
GSE40869 DNaseI Digital Genomic Footprinting from ENCODE/University of Washington [Mouse]
GSE51341 Conservation of mouse-human trans-regulatory circuitry despite high cis-regulatory divergence
SRA SRX188640
BioSample SAMN01179387
Named Annotation GSM1003813_mm9_wgEncodeUwDgfBcellcd43nC57bl6MAdult8wksRawRep1.bigWig
Named Annotation GSM1003813_mm9_wgEncodeUwDgfBcellcd43nC57bl6MAdult8wksSigRep1.bigWig

Supplementary file Size Download File type/resource
GSM1003813_mm9_wgEncodeUwDgfBcellcd43nC57bl6MAdult8wksHotspotsRep1.broadPeak.gz 2.0 Mb (ftp)(http) BROADPEAK
GSM1003813_mm9_wgEncodeUwDgfBcellcd43nC57bl6MAdult8wksPkRep1.narrowPeak.gz 1.5 Mb (ftp)(http) NARROWPEAK
GSM1003813_mm9_wgEncodeUwDgfBcellcd43nC57bl6MAdult8wksRawRep1.bigWig 323.7 Mb (ftp)(http) BIGWIG
GSM1003813_mm9_wgEncodeUwDgfBcellcd43nC57bl6MAdult8wksSigRep1.bigWig 616.0 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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