|
| Status |
Public on Sep 13, 2012 |
| Title |
Stanford_ChipSeq_ES-E14_H3K4me1_std |
| Sample type |
SRA |
| |
|
| Source name |
ES-E14
|
| Organism |
Mus musculus |
| Characteristics |
lab: Stanford-m
lab description: Snyder - Stanford University
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: ES-E14
cell organism: mouse
cell description: mouse embryonic stem cell line E14
cell sex: M
antibody: H3K4me1
antibody antibodydescription: rabbit polyclonal. Antibody Target: H3K4me1
antibody targetdescription: Histone H3 (mono methyl K4). Is associated with enhancers, and downstream of transcription starts.
antibody vendorname: Abcam
antibody vendorid: ab8895
treatment: None
treatment description: No special treatment or protocol applies
control: std
control description: Standard input signal for most experiments.
age: E0
age description: Embryonic day 0 (stem cell)
control: std
control description: Standard input signal for most experiments.
controlid: ES-E14/None/Input/std
labversion: PeakSeq1.0
strain: 129/Ola
strain description: The mice have yellow coats and late onset severe vacuolation in brain (700+ days). Inbred strain used as a control group to compare with null PrP mice.
|
| Biomaterial provider |
Santos lab
|
| Treatment protocol |
None
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeSydhHist
|
| |
|
| Library strategy |
ChIP-Seq |
| Library source |
genomic |
| Library selection |
ChIP |
| Instrument model |
Illumina Genome Analyzer |
| |
|
| Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeSydhHist
|
| |
|
| Submission date |
Sep 13, 2012 |
| Last update date |
May 15, 2019 |
| Contact name |
ENCODE DCC |
| E-mail(s) |
encode-help@lists.stanford.edu
|
| Organization name |
ENCODE DCC
|
| Street address |
300 Pasteur Dr
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305-5120 |
| Country |
USA |
| |
|
| Platform ID |
GPL9185 |
| Series (3) |
| GSE32218 |
Histone Modifications by ChIP-seq from ENCODE/Stanford/Yale |
| GSE49847 |
A comparative encyclopedia of DNA elements in the mouse genome |
| GSE51334 |
DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions |
|
| Relations |
| SRA |
SRX186789 |
| BioSample |
SAMN01174205 |
| Named Annotation |
GSM1003750_mm9_wgEncodeSydhHistEse14H3k04me1StdSig.bigWig |
