|
Status |
Public on Sep 13, 2012 |
Title |
Broad_ChipSeq_Dnd41_H3K9ac |
Sample type |
SRA |
|
|
Source name |
Dnd41
|
Organism |
Homo sapiens |
Characteristics |
datatype: ChipSeq datatype description: Chromatin IP Sequencing antibody antibodydescription: rabbit polyclonal. Antibody Target: H3K9ac antibody targetdescription: Histone H3 (acetyl K9). As with H3K27ac, associated with transcriptional initiation and open chromatin structure. It remains unknown whether acetylation can have different consequences depending on the specific lysine residue targeted. In general, though, there appears to be high redundancy. Histone acetylation is notable for susceptibility to small molecules and drugs that target histone deacetylases. antibody vendorname: abcam antibody vendorid: ab4441 controlid: wgEncodeEH002434 replicate: 1,2 softwareversion: ScriptureVPaperR3 cell sex: M antibody: H3K9ac antibody antibodydescription: rabbit polyclonal. Antibody Target: H3K9ac antibody targetdescription: Histone H3 (acetyl K9). As with H3K27ac, associated with transcriptional initiation and open chromatin structure. It remains unknown whether acetylation can have different consequences depending on the specific lysine residue targeted. In general, though, there appears to be high redundancy. Histone acetylation is notable for susceptibility to small molecules and drugs that target histone deacetylases. antibody vendorname: Abcam antibody vendorid: ab4441 treatment: None treatment description: No special treatment or protocol applies control: std control description: Standard input signal for most experiments. controlid: Dnd41/Input/std softwareversion: ScriptureVPaperR3
|
Biomaterial provider |
DSMZ
|
Treatment protocol |
None
|
Growth protocol |
Dnd41_Bernstein_protocol.pdf
|
Extracted molecule |
genomic DNA |
Extraction protocol |
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeBroadHistone
|
|
|
Library strategy |
ChIP-Seq |
Library source |
genomic |
Library selection |
ChIP |
Instrument model |
Illumina Genome Analyzer IIx |
|
|
Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeBroadHistone
|
|
|
Submission date |
Sep 13, 2012 |
Last update date |
May 15, 2019 |
Contact name |
ENCODE DCC |
E-mail(s) |
encode-help@lists.stanford.edu
|
Organization name |
ENCODE DCC
|
Street address |
300 Pasteur Dr
|
City |
Stanford |
State/province |
CA |
ZIP/Postal code |
94305-5120 |
Country |
USA |
|
|
Platform ID |
GPL10999 |
Series (1) |
GSE29611 |
Histone Modifications by ChIP-seq from ENCODE/Broad Institute |
|
Relations |
SRA |
SRX186748 |
BioSample |
SAMN01174164 |
Named Annotation |
GSM1003552_hg19_wgEncodeBroadHistoneDnd41H3k09acSig.bigWig |