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Sample GSM1003540 Query DataSets for GSM1003540
Status Public on Sep 13, 2012
Title Broad_ChipSeq_A549_Control_DEX_100nM
Sample type SRA
Source name A549
Organism Homo sapiens
Characteristics datatype: ChipSeq
datatype description: Chromatin IP Sequencing
controlid: wgEncodeEH003075
replicate: 1,2
cell: A549
cell organism: human
cell description: epithelial cell line derived from a lung carcinoma tissue. (PMID: 175022), "This line was initiated in 1972 by D.J. Giard, et al. through explant culture of lung carcinomatous tissue from a 58-year-old caucasian male." - ATCC, newly promoted to tier 2: not in 2011 analysis
cell karyotype: cancer
cell lineage: endoderm
cell sex: M
antibody: Control
treatment: DEX_100nM
treatment description: 1 h with 100 nM Dexamethasone (Myers)
control: std
control description: Standard input signal for most experiments.
controlid: A549/DEX_100nM/Input/std
labversion: Illumina_HiSeq_2000
labversion description: Illumina HiSeq 2000
replicate: 1
Biomaterial provider ATCC
Treatment protocol DEX_100nM
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina HiSeq 2000
Data processing
Submission date Sep 13, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL11154
Series (1)
GSE29611 Histone Modifications by ChIP-seq from ENCODE/Broad Institute
SRA SRX186736
BioSample SAMN01174152
Named Annotation GSM1003540_hg19_wgEncodeBroadHistoneA549ControlDex100nmSig.bigWig

Supplementary file Size Download File type/resource
GSM1003540_hg19_wgEncodeBroadHistoneA549ControlDex100nmSig.bigWig 508.1 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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