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Sample GSM1000144 Query DataSets for GSM1000144
Status Public on Sep 10, 2012
Title LICR_ChipSeq_Thymus_H3K27me3_adult-8wks
Sample type SRA
 
Source name Thymus
Organism Mus musculus
Characteristics lab: LICR-m
lab description: Ren - Ludwig Institue for Cancer Research
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell: Thymus
cell organism: mouse
cell description: Thymus
cell sex: M
antibody: H3K27me3
antibody antibodydescription: rabbit polyclonal. Antibody Target: H3K27me3
antibody targetdescription: Histone H3 (tri-methyl K27). Marks promoters that are silenced by Polycomb proteins in a given lineage; large domains are found at inactive developmental loci.
antibody vendorname: Millipore
antibody vendorid: 07-449
age: adult-8wks
age description: Adult 8 weeks
age: adult-8wks
age description: Adult 8 weeks
control: std
control description: Standard input signal for most experiments.
controlid: wgEncodeEM002477
labversion: Pooled & filtered
softwareversion: MACS
strain: C57BL/6
strain description: C57 black 6, the most common inbred strain of laboratory mouse
Biomaterial provider 1)LICR lab; 2)CSHL lab
Growth protocol Thymus_Ren_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeLicrHistone
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina HiSeq 2000
 
Data processing http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=wgEncodeLicrHistone
 
Submission date Sep 10, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL13112
Series (2)
GSE31039 Histone Modifications by ChIP-seq from ENCODE/LICR
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
Relations
SRA SRX185865
BioSample SAMN01163883
Named Annotation GSM1000144_mm9_wgEncodeLicrHistoneThymusH3k27me3MAdlt8wC57bl6StdSig.bigWig

Supplementary file Size Download File type/resource
GSM1000144_mm9_wgEncodeLicrHistoneThymusH3k27me3MAdlt8wC57bl6StdPk.broadPeak.gz 152.4 Kb (ftp)(http) BROADPEAK
GSM1000144_mm9_wgEncodeLicrHistoneThymusH3k27me3MAdlt8wC57bl6StdSig.bigWig 74.9 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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