GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1000118 Query DataSets for GSM1000118
Status Public on Sep 10, 2012
Title LICR_ChipSeq_CH12_Input_immortalized
Sample type SRA
Source name CH12
Organism Mus musculus
Characteristics lab: LICR-m
lab description: Ren - Ludwig Institue for Cancer Research
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
line: CH12
cell organism: mouse
cell description: B-cell lymphoma (GM12878 analog)
cell sex: F
antibody: Input
antibody description: Control signal which may be subtracted from experimental raw signal before peaks are called.
age: immortalized
biomaterial_type: immortalized cell line
age: immortalized
biomaterial_type: immortalized cell line
control: std
control description: Standard input signal for most experiments.
controlid: wgEncodeEM003164
labversion: 01/12/2012 FISH A Lane 5-5
replicate: 1
softwareversion: HCS
strain: C57BL/6
strain description: C57 black 6, the most common inbred strain of laboratory mouse
Biomaterial provider Weissman lab
Extracted molecule genomic DNA
Extraction protocol
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina HiSeq 2000
Data processing
Submission date Sep 10, 2012
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL13112
Series (2)
GSE31039 Histone Modifications by ChIP-seq from ENCODE/LICR
GSE49847 A comparative encyclopedia of DNA elements in the mouse genome
SRA SRX185839
BioSample SAMN01163857
Named Annotation GSM1000118_mm9_wgEncodeLicrHistoneCh12InputFImmortalC57bl6StdSig.bigWig

Supplementary file Size Download File type/resource
GSM1000118_mm9_wgEncodeLicrHistoneCh12InputFImmortalC57bl6StdSig.bigWig 68.9 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap