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Series GSE99815 Query DataSets for GSE99815
Status Public on Jul 10, 2017
Title Bulk cell RNAseq of putatative intestinal stem cell populations
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary A comparative bulk cell RNA-seq analysis of diverse intestinal stem cell populations was performed, for cells expressing the following markers: Lgr5-eGFPhi, Cd166+, Cd24lo, Grp78, upper side population (SP), Bmi1, mTert, Hopx, Dclk1, a lower side population (SP)
 
Overall design For each ISC population of interest, three independent mice (biological replicates) were used. From each mouse, a marker-“positive” and a marker-“negative” population were collected, as well as a "total" population.
 
Contributor(s) Yan K, Kuo C, Kaddis JS, Grimes S
Citation(s) 28686870
Submission date Jun 08, 2017
Last update date Mar 11, 2019
Contact name John S. Kaddis
E-mail jkaddis@coh.org
Organization name City of Hope
Department Diabetes and Cancer Discovery Science
Street address 1500 East Duarte Road
City Duarte
State/province CA
ZIP/Postal code 91010-3000
Country USA
 
Platforms (1)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
Samples (93)
GSM2695739 Grp78Neg_Control_S13
GSM2695740 Grp78Neg_Negative_S23
GSM2695741 Grp78Neg_Positive_S24
Relations
BioProject PRJNA389716
SRA SRP108846

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE99815_RAW.tar 209.2 Mb (http)(custom) TAR (of FPKM_TRACKING)
Raw data are available in SRA
Processed data provided as supplementary file

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