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Series GSE99631 Query DataSets for GSE99631
Status Public on Jul 05, 2017
Title The functional enhancer repertoire of human embryonic stem cells
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Other
Summary We combined Self-Transcribing Active Regulatory Region Sequencing (STARR-seq) with an enrichment step using chromatin immunoprecipitation in a massively parallel reporter assay. We applied this assay, termed ChIP-STARR-seq, to normal (primed) and naive human embryonic stem cells, building up a comprehensive catalogue of functional enhancers. For further details, please refer to the sub-series.

This SuperSeries is composed of the SubSeries listed below.
 
Overall design Refer to individual Series
 
Citation(s) 30033119
Submission date Jun 02, 2017
Last update date Mar 20, 2019
Contact name Ian Chambers
Organization name University of Edinburgh
Department MRC Centre for Regenerative Medicine
Lab Institute for Stem Cell Research
Street address 5 Little France Drive
City Edinburgh
ZIP/Postal code EH16 4UU
Country United Kingdom
 
Platforms (1)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
Samples (79)
GSM2648925 naive_H3K27ac_ChIP_1
GSM2648926 primed_H3K27ac_ChIP_1
GSM2648927 naive_H3K4me1_ChIP_1
This SuperSeries is composed of the following SubSeries:
GSE99627 The functional enhancer repertoire of human embryonic stem cells [ChIP-seq]
GSE99628 The functional enhancer repertoire of human embryonic stem cells [isolated plasmid DNA-seq]
GSE99629 The functional enhancer repertoire of human embryonic stem cells [plasmid DNA-seq]
Relations
BioProject PRJNA389108

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE99631_RAW.tar 1.5 Gb (http)(custom) TAR (of TSV)

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