NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE99393 Query DataSets for GSE99393
Status Public on Jun 30, 2017
Title Gene expression data of CSF1R antibody-treated myeloma-associated macrophages
Organism Mus musculus
Experiment type Expression profiling by array
Summary Colony-stimulating factor 1 receptor (CSF1R) signaling controls MФ differentiation and function, and blocking CSF1R exerts antitumor effects in solid tumors. We examined the effects of CSF1R blockade on multiple therapy. Our results showed that CSF1R blockade inhibited the differentiation, proliferation and survival of M2 and myeloma-associated MФs (MAMs). Microarray was used for determining CS7 effect on polarization of MAMs.
We used microarrays to detail the global programme of gene expression underlying polarizaiton of myeloma-associated macrophages by CSF1R antibody treatment and identified distinct classes of polarization-related genes during this process.
 
Overall design We cultured murine bone marrow (BM)-derived monocytes from 3 C57BL/KaLwRij mice in the presence of M-CSF for 7 days to generate BM-derived Macrophages (BMDMs). Then BMDMs were cocultured with murine myeloma 5TGM1-luc cells overnight and treated with 0.5 nM anti-mouse CSF1R antibody or IgG antibody control for 3 days. After that the BMDMs were wash for 4 times to removed myeloma cells and total RNA of BMDMs was extracted with RNeasy Mini kit (Qiagen). RNA samples were sent to CASE Comprehensive Cancer Center for quality evaluation and microarray analysis with GeneChip®Mouse Gene 2.0 ST .
 
Contributor(s) Wang Q
Citation(s) 28626216
Submission date May 30, 2017
Last update date Feb 21, 2018
Contact name Qiang Wang
E-mail(s) qwang@houstonmethodist.org
Organization name HOUSTON METHODIST RESEARCH INSTITUTE
Street address 6550 FANNIN STREET
City Houston
State/province Texas
ZIP/Postal code 77030
Country USA
 
Platforms (1)
GPL16570 [MoGene-2_0-st] Affymetrix Mouse Gene 2.0 ST Array [transcript (gene) version]
Samples (6)
GSM2643397 MAM CS7 rep1
GSM2643398 MAM CS7 rep2
GSM2643399 MAM CS7 rep3
Relations
BioProject PRJNA388381

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE99393_RAW.tar 53.7 Mb (http)(custom) TAR (of CEL)
Raw data provided as supplementary file
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap