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Series GSE98790 Query DataSets for GSE98790
Status Public on Dec 19, 2017
Title Gene expression changes due to frataxin deficiency and restoration in frataxin knockdown mouse model.
Organism Mus musculus
Experiment type Expression profiling by array
Summary Friedreich's ataxia (FRDA), the most common inherited ataxia in humans, is caused by recessive mutations that lead to a substantial reduction in the levels of frataxin (FXN), a mitochondrial iron binding protein. FRDA is a multi-system disease, involving multiple neurological, cardiac, and metabolic manifestations whose study is hindered by a paucity of animal models that faithfully recapitulate human disease features. We developed an inducible (doxycycline) mouse model of Fxn deficiency (FRDAkd) that enabled us to control the onset, progression and potential rescue of disease phenotypes by the modulation of Fxn levels using RNA interference. We found that systemic knockdown of Fxn in adult mice led to multiple features paralleling those observed in human patients, including electrophysiological, cellular, biochemical and structural phenotypes associated with cardiomyopathy, as well as dorsal root ganglion and retinal neuronal degeneration and reduced axonal size and myelin sheath thickness in the spinal cord. Fxn knockdown mice also exhibited other abnormalities similar to patients, including weight loss, reduced locomotor activity, ataxia, reduced muscular strength, and reduced survival, as well as genome-wide transcriptome changes. We performed microarray analysis of heart, cerebellum and dorsal root ganglia in FRDAkd mouse model of frataxin deficiency, and found several molecular pathway dysfunction via genome-wide transcriptome analyses. We also found that, upon restoration of near wild-type FXN levels, we observed significant recovery of function, pathology and associated transcriptomic changes, even after significant motor dysfunction was observed. The rapidity of Fxn expression due to doxycycline removal and its robust correction of various parameters, even when restored after the onset of motor dysfunction, makes this FRDAkd mouse model an appealing potential preclinical tool for testing various therapeutics for FRDA.
 
Overall design Heart, cerebellum and dorsal root ganglia samples from FRDAkd mouse model at week 0, 3, 12, 16, 20 and 4, 8 weeks post dox treatment (rescue) with four biological replicates were used for expression profiling.
 
Contributor(s) Chandran V
Citation(s) 29257745
Submission date May 10, 2017
Last update date Jul 25, 2021
Contact name VIJAYENDRAN CHANDRAN
E-mail(s) vijayendran@gmail.com
Organization name University of Florida
Street address Assistant Professor, Department of Pediatrics, University of Florida, School of Medicine, 1600 SW Archer Road, Box 100296
City Gainesville
State/province FL
ZIP/Postal code 32610-0296
Country USA
 
Platforms (1)
GPL6885 Illumina MouseRef-8 v2.0 expression beadchip
Samples (192)
GSM2611831 WK3_TG_ND_Heart_rep 1
GSM2611832 WK3_WT_Dox_Heart_rep 1
GSM2611833 WK16_WT_Dox_Heart_rep 1
Relations
BioProject PRJNA386204

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE98790_RAW.tar 177.2 Mb (http)(custom) TAR (of IDAT)
GSE98790_non_normalized.txt.gz 23.9 Mb (ftp)(http) TXT
Processed data included within Sample table

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