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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Jul 07, 2020 |
| Title |
Structural basis of epigenetic protection of mouse lymphoid progenitor cells by Dnmt1 |
| Organisms |
Danio rerio; Oryzias latipes; Mus musculus |
| Experiment type |
Methylation profiling by high throughput sequencing
Expression profiling by high throughput sequencing
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Contributor(s) |
Iwanami N, Takeshita K, Lawir DF, Suetake I, Tajima S, Sikora K, Trancoso I, O'Meara C, Siamishi I, Clapes T, Trompouki E, Takahama Y, Furutani-Seiki M, Kondoh H, Yonezawa Y, Schorpp M, Boehm T |
| Citation(s) |
32585597 |
| Submission date |
May 08, 2017 |
| Last update date |
Jul 07, 2020 |
| Contact name |
Thomas Boehm |
| E-mail(s) |
boehm@ie-freiburg.mpg.de
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| Organization name |
MPI-IE Freiburg
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| Department |
Immunology
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| Street address |
Stübeweg 51
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| City |
Freiburg im Breisgau |
| ZIP/Postal code |
79108 |
| Country |
Germany |
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| Platforms (3) |
| GPL18413 |
Illumina HiSeq 2500 (Danio rerio) |
| GPL21493 |
Illumina HiSeq 3000 (Mus musculus) |
| GPL23444 |
Illumina MiSeq (Oryzias latipes) |
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| Samples (48)
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| GSM2607703 |
Medaka Dnmt1 Mut1 |
| GSM2607704 |
Medaka Dnmt1 Mut2 |
| GSM2607705 |
Medaka Dnmt1 Mut3 |
| GSM4195090 |
Zebrafish WT1 (TruSeq) reanalysis |
| GSM4195091 |
Zebrafish WT1 (EpiGnome) reanalysis |
| GSM4195092 |
Zebrafish WT2 (TruSeq) reanalysis |
| GSM4195093 |
Zebrafish WT2 (EpiGnome) reanalysis |
| GSM4195094 |
Zebrafish WT3 (TruSeq) reanalysis |
| GSM4195095 |
Zebrafish WT3 (EpiGnome) reanalysis |
| GSM4195096 |
Zebrafish Dnmt1 Mut1 (TruSeq) reanalysis |
| GSM4195097 |
Zebrafish Dnmt1 Mut1 (EpiGnome) reanalysis |
| GSM4195098 |
Zebrafish Dnmt1 Mut2 (TruSeq) reanalysis |
| GSM4195099 |
Zebrafish Dnmt1 Mut2 (EpiGnome) reanalysis |
| GSM4195100 |
Zebrafish Dnmt1 Mut3 (TruSeq) reanalysis |
| GSM4195101 |
Zebrafish Dnmt1 Mut3 (EpiGnome) reanalysis |
| GSM4223348 |
HSC control rep1 |
| GSM4223349 |
HSC control rep2 |
| GSM4223350 |
HSC control rep3 |
| GSM4223351 |
HSC dnmt1 mutant rep1 |
| GSM4223352 |
HSC dnmt1 mutant rep2 |
| GSM4223353 |
HSC dnmt1 mutant rep3 |
| GSM4223354 |
MPP1 control rep1 |
| GSM4223355 |
MPP1 control rep2 |
| GSM4223356 |
MPP1 dnmt1 mutant rep1 |
| GSM4223357 |
MPP1 dnmt1 mutant rep2 |
| GSM4223358 |
MPP4 control rep1 |
| GSM4223359 |
MPP4 control rep2 |
| GSM4223360 |
MPP4 control rep3 |
| GSM4223361 |
MPP4 control rep4 |
| GSM4223362 |
MPP4 dnmt1 mutant rep1 |
| GSM4223363 |
MPP4 dnmt1 mutant rep2 |
| GSM4223364 |
MPP4 dnmt1 mutant rep3 |
| GSM4223365 |
MPP4 dnmt1 mutant rep4 |
| GSM4240770 |
bone marrow progenitors, control rep1 (TruSeqMeth) |
| GSM4240771 |
bone marrow progenitors, control rep2 (TruSeqMeth) |
| GSM4240772 |
bone marrow progenitors, control rep3 (TruSeqMeth) |
| GSM4240773 |
bone marrow progenitors, dnmt1 mutant rep1 (TruSeqMeth) |
| GSM4240774 |
bone marrow progenitors, dnmt1 mutant rep2 (TruSeqMeth) |
| GSM4240775 |
bone marrow progenitors, dnmt1 mutant rep3 (TruSeqMeth) |
| GSM4240776 |
bone marrow progenitors, control rep1 (EMSeq) |
| GSM4240777 |
bone marrow progenitors, control rep2 (EMSeq) |
| GSM4240778 |
bone marrow progenitors, control rep3 (EMSeq) |
| GSM4240779 |
bone marrow progenitors, dnmt1 mutant rep1 (EMSeq) |
| GSM4240780 |
bone marrow progenitors, dnmt1 mutant rep2 (EMSeq) |
| GSM4240781 |
bone marrow progenitors, dnmt1 mutant rep3 (EMSeq) |
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| This SuperSeries is composed of the following SubSeries:
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| GSE98646 |
Structural basis of epigenetic protection of mouse lymphoid progenitor cells by Dnmt1 (Medaka) |
| GSE141114 |
Structural basis of epigenetic protection of mouse lymphoid progenitor cells by Dnmt1 (Zebrafish) |
| GSE142223 |
Structural basis of epigenetic protection of mouse lymphoid progenitor cells by Dnmt1 [Mouse RNA-seq] |
| GSE142834 |
Structural basis of epigenetic protection of mouse lymphoid progenitor cells by Dnmt1 [Mouse WGBS] |
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| Relations |
| BioProject |
PRJNA385812 |
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